XLOC_013544


Basic Information

Item Value
gene id XLOC_013544
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36902021 ~ 36918987 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027379
GTGTGTTCCTCTACCTCTTCTTTTTTAACTGCTGCACAGGATTTGGGGTCTTTGGATTGAACCACCGGTGCTCTTCAACCTGATGTAACTTTAGCCGGTTAACTGGATTACGTTTGAAACACTGGGAAATCAGGTTGAAGAGCATCGGTGGTTCAATCCAAAGACCCCAAATCCTGTGCAGCAGTTAAAAAAGAAGAGaaaaaaaaagaaaaaacgaaaTAAGAAGAAAGCACCATTAAAGTCACAAAACTAGCATTATCAGTTATTAATtactccctcatgtcattccaaacccctaaGACCTTACTTTTCTTCAGTGTCAGTTCATGATGTGTGTTGATGAGAGCTCTGTCCTGCACTGTATGCgtgtcgcactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttTTCCGTCAGCAGTGAGACACACATCCAGTGCAGTACAGGACTTCTGAAGTCATTCTTTTTGTTTGAtaagttttgtgtttttctttctgcatTAAAGAAGTTTCTCTTCACAATGACAGCTGTAGCTCCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaatatttgagatgaaatcaaatcatcaaaccatgagagctctgtcctgcactgtgtgtgtgtccactgctgacgtttacgtcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgGGCTCATCTGAACGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttaatttgtgttctcAATATGAACTAAACATGAACATGAATTAAGGACATgaggtgagtaattaatgacaataatggtAATTAATGGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtacccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgtttggacttccagcagtgacaattaaaccacactgaactgaactgaacttcaactgtgaaaactggactgacgcagttttaatttacttctatgttaagctgctttgacacaatccacattgtaaaagcgctatagaaatgaagatgaattgaactgaattaatgATGAGAGTCCATCAGGAAATCCAGTGCTGTCACAGTTTTCTCTTCTAAAGTGTCATCAAAGATCTGCTCAACTATTTTCTCCCTCATAAATGAATCTGGTGTTCTGTCATAAGAGAGACTGATGGTTTTATAATTAAGTGTTCATGATTGTTCTGTAATGAATTGTTCTTTGAATTGTTTTGTGAAGAattgcttttatatatttttaataattcagatGAAATCCTGTGAATCAAACTGAAGCTCTGATCATCATTTCTGAGTTTTCTAAATGACTCCTTACTCAATTAAAGAGAGAGTTCTCCCTAAACTATTtactcaagtgcttccaaaccgATGAGGttatttcctctgttgaacactgaagacgacacaaatctgaaaatctgtaaccattgatgtccacagtaggaaaacaaatacaatggaagtcgatagggtatatgccgaagcatgctaataggactttcaatttgtcagtaacctgggttattTGCTTCCGGTCAGCTGTATGCAAATGAAAAAATCTGCACGTTTAAGGTcaattttctttcaaaatcagcgatcttcactggcTGAGcaatatctgatataaagtgggtctcagattgtacaagaagcactgcattaaattacattttccctgccatgtttttataatatgagcatttatttttccccagtatattcaatggagctgcgctagcctgctgattctgacgggcgcgtgcaagtaaagctttttgtctcgttttacgcttgagaaactaaatgaatgccaaagtatatttaattgaatgtatttaaattacattacaacatccatgctggAAAAGGAACCGTGTaaagtagaaaaataaaataaaatcacaataacaggtcaccggaagttatcagtatgggaaaaacactagctcggcatataccctatagttacaggtttccagcatttttcaaaatatcttcttttgagtataacagaaaaaaaaaacttatagtaagggctgagtaaaagatgacagaatattcattatAGGCTGAAGGAATCTCTTTTAACAACCCAGTAGTGCCATATACTATGTTTACTATGATTTAACACTAATTTGTGGAGCCTGTTTAGCCAAATGGAACCACAGAGAAGGTTTTACTGTTAGACAATATGTTGTTATATACTACAATATCATATACTAATACAACAAATATTTCCCCCCTGGTACAGTGAAGATTGCAGACCACCCTTGCAGACTGTTCAAACTTTGACAATCTCAGTTTAAAGCAACAGTTTAGACTCGAGTAACTGGACTGTGTTGGACAGCTTTCATGTATACGACTGCAAGAGAAGTTCCTGAATACCTGAGGTCTACTGTTTAGATGCCAAGCAGATACACTGCATAGGTCAAACATTGGCAACACAAGCAGCTCTGGGTTCAGGCCTGGAAGAACAGTCTCATGATGATCTCAGTGTGATTTGGGCTGTCGCTTGTAGAAGCAGCTGTTCTGCTCAGTTACTGCCATCACAAGCTGTGTCCAGCAACATCAAGAGAAAATCTACAAAAATAACAGATAAAAGAGAAACATGTTCAATCATTATTGAAAGAAACACAAGACACCAGTCGATGACATTATAGCATCTTTTAGAAGTAACCAACAAtaacttttaaatacatttctg
>TCONS_00026665
CTCAAATGGCAAATAACATGTCAGCTGTGCTTTTTACTCGAGTTAATTTGATTAAGCCTGTATTTGTCAACGATAATCATCAAAGTGACACGATGGCTTCTCTTACATCTCCTACCGTGATGAGAAGCCCAACAGAAAACCCAGAGAAAAGGAGGAAAGGGAATAAAGCCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGTAAAGCGTCCTTTCCTTTGCTGTGACTGGAACAGAGTGGCTCCCTTTGAACCACAGTCGGATATCGATGATTTCGAGCATCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTACCAGGCCAGGTCTGTGAAGATCCTCAGCCgttgagtgttccgggcccctTCAGCATCAAGCAAACAACAGATGTGCCGAATGCAGATCCGGCCCGTCCAGAGTCCTCAACGGTCCTTACAGATCATGTTGACCCTAAGCAGATGTGTCCGCCAGTCCAGGTCTGTGACCGCCTCGAGTCATTGGCTGTTCCAGGACCATCCAGGATCAAGTCTACGACTGCCGCAGATCATGTTGACCCTGAGCAGATGCGTCCGCCAGTCCAGATCTGTGAAGATCCTGAGCCgttgagtgttccgggcccctTCGGCATTAAGCAAACAGCAGATGTGCCGAATGCAGATCCGGCCCGTCCTGAGACCTCAACGGCCCTCACAGATCATGTTGACCCTGAGCAGATGCGTCCGCCAGTCCAGATCTGTGAAGATCCTCAGCCGTTGTGTGTTCCGGGCCCATCTAGGATCAAGCAAACAGCAGATCCGGCCCGTCCTGAGTCCCCAACGGCCCTGACAGGTCATGTTGATACTGAGCTAGTGTGTCTGCCAGGCCAGATCTGGGAAGATCCCCAGCCAATAAGTGTCCATGGCCTCACCAATATTAAGAAAACGACGGATGCAGATTCGGCCTGTGCTGAGTCGCCTCCGTCTGTTCAACACCCCTCTAAAATTGAAGGGACTGAGGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTTAAGAGAGTATGGAAGGCTATAACGCGCCCTTTTCTGTGCTGTGACACAGATATAGTCCAGCATTTTATGCCACATCCAGAGCTGGAGGAAGCTAACGAAGCTTCTGGACCCCCTGGTAgATTAGATCTGTCTGAATTTAAAGTCGGAGCCGTGATTGGAGAAGGAGCGTTTGGCCAGGTGTTTGTGGCATCTTACAAACTTCGTAAAAGAGTAAAGGTTGCCCTGAAGTTTATCTACAAGAGTTTCGACGACCGCTATCTTGACATTgatgGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAAGTTGGCGAATGCTCCGCAATGTCCAAACATCATCGGATTACACGACTGGGTTGAGAATGAGAGAAACTTCATTCTCAGCCTGGAGTACGCAGAGTCATACCAGACCTTGGATCAGTACATCAAAGATACATTGGACGTTGGTGAAAAGCGAGCACGCCGGTTAATGCGTCAGTTGATCCAAGCTGTAAAGTTCTGCACTGAGCGAGGAGTTTTCCATGGAGATATACACACAGAAAACATCCTGGTGACGAAACCCCAATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCGACAGCAGTGAATATCGAGGAGCTATCATATGCACGCCACCTGAGGTTTTCTTGCGCCCCATACACCATGCTGACCCAGTAAACGTCTGGACAATTGGCGTCGTGCTGTATGAAATCTTGCATGCAGATTTGCCCTTTACCGACGAACATTCAATAATGTTTGAATCCGCTGAGATGCACCCCAGGTTATCTACAGCATGCCAGGACCTGATTTCCCAGTGTTTCAAACGTAATCCAGTTAACCGGCTAAAGTTACATCAGGTTGAAGAGCATCGGTGGTTCAATCCAAAGACCCCAAATCCTGTGCAGCAGTTAAAAAAGAAGAGaaaaaaaaagaaaaaacgaaaTAAGAAGAAAGCACCATTAAAGTCACAAAACTAGCATTATCAGTTATTAATtactccctcatgtcattccaaacccctaaGACCTTACTTTTCTTCAGTGTCAGTTCATGATGTGTGTTGATGAGAGCTCTGTCCTGCACTGTATGCgtgtcgcactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttTTCCGTCAGCAGTGAGACACACATCCAGTGCAGTACAGGACTTCTGAAGTCATTCTTTTTGTTTGAtaagttttgtgtttttctttctgcatTAAAGAAGTTTCTCTTCACAATGACAGCTGTAGCTCCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaatatttgagatgaaatcaaatcatcaaaccatgagagctctgtcctgcactgtgtgtgtgtccactgctgacgtttacgtcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgGGCTCATCTGAACGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttaatttgtgttctcAATATGAACTAAACATGAACATGAATTAAGGACATgaggtgagtaattaatgacaataatggtAATTAATGGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtacccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgtttggacttccagcagtgacaattaaaccacactgaactgaactgaacttcaactgtgaaaactggactgacgcagttttaatttacttctatgttaagctgctttgacacaatccacattgtaaaagcgctatagaaatgaagatgaattgaactgaattaatgATGAGAGTCCATCAGGAAATCCAGTGCTGTCACAGTTTTCTCTTCTAAAGTGTCATCAAAGATCTGCTCAACTATTTTCTCCCTCATAAATGAATCTGGTGTTCTGTCATAAGAGAGACTGATGGTTTTATAATTAAGTGTTCATGATTGTTCTGTAATGAATTGTTCTTTGAATTGTTTTGTGAAGAattgcttttatatatttttaataattcagatGAAATCCTGTGAATCAAA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050420-242 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000089627

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027379 False 2959 lncRNA 0.39 3 36902021 36918987
TCONS_00026665 True 3352 mRNA 0.46 9 36903456 36909773

Neighbor

gene id symbol gene type direction distance location
XLOC_013543 NA coding downstream 14552 36849149 ~ 36887469 (-)
XLOC_013542 NA coding downstream 168119 36714639 ~ 36733902 (-)
XLOC_013541 BX950224.1 coding downstream 436555 36455307 ~ 36465466 (-)
XLOC_013540 b3gat1a coding downstream 766222 36105930 ~ 36135799 (-)
XLOC_013539 exosc5 coding downstream 835934 36060295 ~ 36066087 (-)
XLOC_013545 map3k10 coding upstream 29892 36948879 ~ 37007294 (-)
XLOC_013546 six9 coding upstream 318727 37237714 ~ 37241115 (-)
XLOC_013547 six5 coding upstream 326344 37245331 ~ 37252036 (-)
XLOC_013548 yap1 coding upstream 364778 37283765 ~ 37355666 (-)
XLOC_013549 cep126 coding upstream 461138 37380125 ~ 37407235 (-)
XLOC_013384 BX323829.1 misc downstream 17359790 19542102 ~ 19542231 (-)
XLOC_013536 CU138549.1 non-coding downstream 1328726 35573181 ~ 35573295 (-)
XLOC_013531 NA non-coding downstream 1647999 35251298 ~ 35254022 (-)
XLOC_013550 AL627088.1 non-coding upstream 490836 37409823 ~ 37415445 (-)
XLOC_013551 NA non-coding upstream 622728 37541715 ~ 37551134 (-)
XLOC_013555 NA non-coding upstream 1371094 38290081 ~ 38297955 (-)
XLOC_013556 NA non-coding upstream 1457691 38376678 ~ 38378205 (-)
XLOC_013557 NA non-coding upstream 1840347 38759334 ~ 38768498 (-)

Expression


Co-expression Network