CI01000340_01610308_01614177


Basic Information

Item Value
gene id CI01000340_01610308_01614177
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1610230 ~ 1614911 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_01610308_01614177.mRNA
AGACAGAGCTGAGTGAGCTCAATACACAAGCTCAATCCATTCATCCTCTGAAAAGGAAGCGAATTGCCGGTGTGACGGCACATTGCAGCGGTCTTTCTCATGAAGTGGGCACGGATAAGTGCCGAGAGAGTTCACCTGGGTGCTTCAGCAAGCCTAAAAGAGCAGCTTTCCTATAAAAGTGCTTTTTTCCTCTAAAAAAGCAAGCACAGACTGAGAGTCTTTTTAAAGATGCTTTTCGGCCTGTGTGTTTCAAGATGCAGTTGATATCTTTCAACCTCGGACAGTCATGATCACTGTCTCAAGTATTTGGGTCTCTCCTATGCTGAGACAGCGTTTGTGGATGGCTCTTGTCCTCATTGCAAGAACATGACAATGGCAACATTGCTATCACGACTCTCTTTTCTGGTAAGAGAGAGAAAATCACCTCATTTGCTCATCACTGTGATGCACAAGGCCACGCTGAGGACGATGCGAGGGCAACTGGAGTGTTTCCGCCAGGTCAGCCCCCACTGGCCTCCCATTCCTCGACTAGCATGTTGGATCCAGTGGAGCTCCTGGATAACATTGACAGTGCGTCACATGATGCACCTGATTTTTAATTCGGGGCTCCAGATGAGGACGAACTATCGAAGCATCGGAGGGCAGGCTTATGCCTTCAGATGCTGAGGACTCAGCTGGAGTTCCACCCTTGGGTGTGATAGCTCAGTCAGAGTTGGCAGCCATGCTAAGTTCCAATGCCTTTCTTCCCTGAAGTGCATAAAAAACTGACAAAATCATGGAGTGCAGCTTTTACTGCCCGGTCCCACTTCACAAGCTCTTCCACCCTTGACAGTGGGACAGCCAGGAGGTATACGGACGTTCCACAGGTGGAGTGTGCGGTTACGGTCCATTTATGCCCACAAGACGCTGACACCTGGCGGAATCGTCCCAGACTCCCATCCAGGGCCTGCGCCCGCCCAGGCAAAGACACCCCTGTCCTGCATGCCAAAACTGCAGTCCTATTGAAGGATGTAATAGAGCCTGTCCCTCCAGCCGAGATGAAGAAGGATTTCTACAGCCCTTACTTCCTTGTACCAAACAGCAAGTACAGCCAGGGAAGAGCTATAGGTTTCACAGGAATTTCATCAGCTTTTCAAGCAAACAAACATACAAAGACACACAGCAAAGAGGGGCCCTTGCAAAGCCCTGTCCATGTCTCACAAATTCCATGTGATTAAGTAACATAGAGATTGAGTGTATGAGAGAGAGAGAGAATGAGAGAGAAAATAACACAGTGAGTCCAGAGATGTAATAAA

Function

NR:

description
PREDICTED: neurexin-3b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_01610308_01614177.mRNA True 1295 mRNA 0.49 3 1610230 1614911

Neighbor

gene id symbol gene type direction distance location
CI01000340_01436981_01473643 PKN2 coding downstream 136587 1436389 ~ 1473643 (-)
CI01000340_01422577_01422959 NA coding downstream 187271 1422463 ~ 1422959 (-)
CI01000340_01400601_01408156 LRRC8C coding downstream 202074 1399456 ~ 1408156 (-)
CI01000340_01385672_01396802 LRRC8DB, LRRC8D coding downstream 211434 1384749 ~ 1398796 (-)
CI01000340_01375418_01382944 ZNF326 coding downstream 227286 1375042 ~ 1382944 (-)
CI01000340_01620065_01624298 NA coding upstream 4350 1619261 ~ 1624726 (-)
CI01000340_01785945_01793672 LMO4, LMO4B coding upstream 170916 1785827 ~ 1793954 (-)
CI01000340_01839512_01846883 NA coding upstream 223366 1838277 ~ 1846893 (-)
CI01000340_01894781_01909824 HS2ST1 coding upstream 279763 1894674 ~ 1911359 (-)
CI01000340_01916883_01917263 NA coding upstream 300742 1915653 ~ 1917352 (-)
G486406 NA non-coding downstream 52720 1557273 ~ 1557510 (-)
G486348 NA non-coding downstream 115588 1494439 ~ 1494642 (-)
G486276 NA non-coding downstream 177559 1432444 ~ 1432671 (-)
G486289 NA non-coding downstream 323299 1286635 ~ 1286931 (-)
G486267 NA non-coding downstream 358266 1250482 ~ 1251964 (-)
G487872 NA non-coding upstream 66449 1681360 ~ 1682396 (-)
G487878 NA non-coding upstream 117132 1732043 ~ 1732280 (-)
G487881 NA non-coding upstream 131326 1746237 ~ 1746499 (-)
G487905 NA non-coding upstream 215891 1830802 ~ 1831023 (-)
G487918 NA non-coding upstream 309367 1924278 ~ 1925429 (-)
CI01000340_00787534_00791061 NA other downstream 818821 786551 ~ 791409 (-)
G485786 NA other downstream 1284514 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 1528135 62780 ~ 82095 (-)
G487884 NA other upstream 280890 1895801 ~ 1902272 (-)
G488782 NA other upstream 2390894 4005805 ~ 4006448 (-)
G488862 NA other upstream 2892285 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 2985309 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 3705842 5320753 ~ 5330215 (-)

Expression


Co-expression Network