CI01000340_01952181_01975472


Basic Information

Item Value
gene id CI01000340_01952181_01975472
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1951515 ~ 1976286 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_01952181_01975472.mRNA
ATGCAAATGAGTCAGCTTCCAAAAAAAGGGCACTTTTCCAGCCTGAAATTACACCATTTTCATTGGTCAAGCTAAACCCGAGAGGTGTGACCTCTGCAAAATTTAAAAGGGCATTATCTCAGTGATTCGCTCTCTTCTTTTGCTGTTTATGTGGAAAAGATTGGATACATCCGGTCTGACCATGGGACTTCCCTGCATTGCCGGGGCCTCAAAATTACAACAAGCCATGTTTCAACTTTCTGCCTGGGAAAGAGAACTCTCCCAATAACAACCGAGTCAGACTAACCTTGCAGAAGTTCGTCATTCTTCACTCAACCCAGAAGAACCTGACTGCAACTTCACCACCATCGAAGTACATGAACCATCAAGTATATCTTCTGAGACCTCATACCCAAACGCTCTTCAATGGAAAAGGCATTGTGCAACTATCATACATTTAACTAACTGAACAGTGGTTTCATGTAAGAGGTAGATCCCTTGTTGCCAAGGTGCTTCATGGTTTTATTCATGCGGTTAACTGACTCTTACGTTTCCATAGCTTAATTCCCCTGTTTTGGTTTCAGTTTCACTCATTCACTTTCATATTCCATTTTACCCATGATTTATGTGTATGTGTTTGTTTAGACTAGTTAAGTGTTGATGATTTTGTTAAATAAGACTTTTGTGCACATTCACATGAGTGTTAATTCTGTGGTCTTTGCAAAACAAAGTCCCTTTAACGACGTTAGTACTACTACATGCTAGTACTGTATCCAGTAAGAAAGAGTTATTTTCCTGTGGTGCGTTTCTTGTATGCTGTGCAGACAGAGCGAGAATGGCAGGCAAACAGCAACAACCTAACTTTACTTCTGAACCAACAAATGGCACTGGCAAGGGATCTACGGAAAGAAAGACTGTCTTAGAAAAGGCTACGAAAAAGCAAACAAACAAAAAACTTATGGATCAGAAAAGAGATAAAACCAGAATTGACATCAGTGTTGCTTTTCCATGCTGGAGACAACTGCGGGAGTCAAAGGTCGTTTGGCTGCATTTCCATGCAAATGGTCTGTTGAGTATGTACAAGGACTGGGCTGCACTGCCCTCTAGTGGTGGATGTCCATCTGAGGCCAAACGAGGTTTGAAAAAGAATGAAAGGCAAATCGGAATTGTAACATCTGCCGTATTGGGGTGCTCTTCCCCCTCCTGTATGGCTTTCGTCACACGCACAAAAAGGATATTTGCTGAGGCAGTTCATATGCAAAACTTTGCAAGATATTGTCAGACGCTCTCATTTGTCCTTGCCACGTTTGTCATTAATCTTTGGCCCTGCTTGAGCAGTATACACAAAAAAGGGGAAAAAAAGAGAGAGAAATGTAGAGTGGCACAGGGAAATGACCTAATACCCAAAGGAGCAGAAAAACAAGGTGAACAGGGTACAACAAGTACTAAGCCACATTTGAGAAAGGTGGAGAGCTGAGAGAGGCAAAGCCTGGAGACTTTGTTGGCAGAGATGAATTAGAGCACTGGAAATAGCCTTTTCCACCTTCCAACTGATACCGCCAGTTAACACACTCACACACACATACGCACATCTATCTCTCTTGCTTCTCATTTGAAACATCCACAAAAAGACAGAGAAGGAGAGAGAGCATTGTGCGGAGGAAGAATAGACTGTAGCATGTTCAAAGTGAGACTCGATTTTCAGTTCTCCAGAAAGCCATTTTGTCGTCCACATATGATGCAAGTGAAAATAATATGCTTGACCCTTTTGTGTGCACACACGTTGAGAAGTTTGTTAGACTGTGGAGTTCCATAATAACTCACAGACCTCATGTATATTAAGTAGAAATTCACCGCCTTTTATGATAAATTGCCAGGGTAATAGCAGGACACCTTTTTTGCATTTCAATATGAGTGGGTGTCAGATTGTTATTTCATTACCTGACGACACATTAGCTGATGGGAATTTAATTTGCTATTTCCTGCTCTCTCTTCCTCTCTTTGATAGCCAGGTATCCACAGAGACCACGTCTAAACACGTATGGTCTTAAGAGGAGGGGTCGAAAATGAATTATTAAAGGAATACACACGGATGTCAAACGCATTCTATAGCCAATTTCAAGCCCTCGTAAAAAGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_01952181_01975472.mRNA True 2122 mRNA 0.41 5 1951515 1976286

Neighbor

gene id symbol gene type direction distance location
CI01000340_01916883_01917263 NA coding downstream 34163 1915653 ~ 1917352 (-)
CI01000340_01894781_01909824 HS2ST1 coding downstream 40156 1894674 ~ 1911359 (-)
CI01000340_01839512_01846883 NA coding downstream 104622 1838277 ~ 1846893 (-)
CI01000340_01785945_01793672 LMO4, LMO4B coding downstream 157561 1785827 ~ 1793954 (-)
CI01000340_01620065_01624298 NA coding downstream 326789 1619261 ~ 1624726 (-)
CI01000340_02008099_02012700 SOX14.S, SOX14 coding upstream 31736 2008022 ~ 2012700 (-)
CI01000340_02172629_02189732 HDLBP, HDLBPA coding upstream 195397 2171683 ~ 2189732 (-)
CI01000340_02293072_02301920 STK25B, STK25, STK25A coding upstream 316728 2293014 ~ 2302947 (-)
CI01000340_02329631_02332000 DTYMK coding upstream 353320 2329606 ~ 2332000 (-)
CI01000340_02333476_02337529 AGXTA coding upstream 356816 2333102 ~ 2337529 (-)
G487929 NA non-coding downstream 9980 1941327 ~ 1941535 (-)
G487918 NA non-coding downstream 26086 1924278 ~ 1925429 (-)
G487905 NA non-coding downstream 120492 1830802 ~ 1831023 (-)
G487881 NA non-coding downstream 205016 1746237 ~ 1746499 (-)
G487878 NA non-coding downstream 219235 1732043 ~ 1732280 (-)
G487971 NA non-coding upstream 14288 1990574 ~ 1992638 (-)
G488096 NA non-coding upstream 189706 2165992 ~ 2166240 (-)
G488101 NA non-coding upstream 218040 2194326 ~ 2194550 (-)
G488102 NA non-coding upstream 218414 2194700 ~ 2194971 (-)
G488103 NA non-coding upstream 218824 2195110 ~ 2195384 (-)
G487884 NA other downstream 49243 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 1160106 786551 ~ 791409 (-)
G485786 NA other downstream 1625799 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 1869420 62780 ~ 82095 (-)
G488782 NA other upstream 2029519 4005805 ~ 4006448 (-)
G488862 NA other upstream 2530910 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 2623934 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 3344467 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 4207004 6095704 ~ 6194501 (-)

Expression


Co-expression Network