CI01000340_02172629_02189732 (HDLBP, HDLBPA)


Basic Information

Item Value
gene id CI01000340_02172629_02189732
gene name HDLBP, HDLBPA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2171683 ~ 2189732 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_02172629_02189732.mRNA
TGGAGTTTCACTACGAGCTTCTGCACCATACAGGGCAGACGGGAACACAAACACAATGGCACACTCGGACTCCGTGTAAACGTGGGATTTCGACCATGAGCTCAGTCGCTGTACTTACGCAAGAAAGCTTTAATGAGCATCGCAGTGGCCTTCTGCCAGAGCAGGTCAAAGCTGCTGTGGCAGGCTCTAGCGGTGCTGAAGATGAGGATAGCCTCCCCACCTACAAGGATGCCTTTCCCCCTCTGCCTGAAAAGCCTTTGCCAGAGGGGGTACAGGAGACTGGAAATGCCTGGACGTCTAAACTTAAACCTCTCAAGTCCTCAATAATTACCCAGGTTTTCCATGTGCCTCTGGAAGAGCGCAAGTACAAGGACATAAACCAGTTTGGAGAAGGAGACCAGGCTAAAGTGTGTCTTGATATCATGCACAAGACTGGAGCCCACCTGGAACTCTCTATGGCTAAAGACCAAGGCCTCTCCATAATGGTCTCTGGGAAACATGACGCTGTCATGAAAGCCCGCAAAGAGATTGTGTCCCGACTGCAGACTCAGGCTTCAGCTACTGTGGCCATCCCCAAAGAACATCATCGCTTTGTCATCGGCAAGAGTGGGGAGAAGCTGCAGGAGCTCGAGCTGAAGACTGCCACCAAGATCCAGATCCCTAGACCCGAAGACCCCAGTAACCTGATCAAGATCTCTGGAACCAAGGAAGGCTTGGAGAAGGCCAAGCATGAGATCCTGCTCATCTCTGCCGAGCAGGATAAGCGTGCTGTGGAGAGAATGAACATTGAAAAGGTGTACCACCCCTTCATCACTGGAGCTTATAACAAGCTGGTGGGGGAGTTGATGCAGGAGACGGGAGCCCGCATTAATGTCCCTCCACCCAGTGTGAACAAAACGGAGATTGTCATCACTGGGGAAAAAGAGCAGGTGGCCCTGGCCATAGCCAAGATCAAGAAGATTTATGAGGAGAAGAAGAAGAATGCAACCACTATTGCAGTGGAGGTGAAGAAATCTCAGCACAAGTATGTGATTGGGCCTAAGGGTAACACCCTGCAAGAGATCCTGGACAGGACCGGCGTCTCGGTCGAGATCCCACCCCTCGACAGCAGCTCAGAGACAGTAATCCTGCGCGGGGAGCCAGACCGGCTGGGCCAGGCACTCACTGAAGTGTATGCCAAGGCCAACAGCTACACTGTGTCCTCAGTCTCTGCTCCCTCTTGGCTTCATCGTTTCATTATTGGCAAGAAAGGACAGAATCTGGCAAAGATCACGCAGCAAATGCCCAAGGCGAGTCAACTTTTCCCTAATCACATCAGAGTGCACATTGAGTTCACTGAGGGAGAGGACAAGATCACCTTGGAGGGTCCCACCAAAGATGTACAGATAGTACAGGGCCAGATTGAAGAAATTGTTACAGATCTGGTTAGTCGAATGGACTACACTGAGATAAGTGTGGACCCCAAGTTCCACCGACATTTAATTGGGAAAGGCGGTGCAAACATTAACCGCATAAAGGAACTGCACAAAGTGTCAGTCCGCATTCCACCTGACAATGAGAAAAGTAACCTTATCCGTATCGAGGGTGACCCCCAGGGCGTGCAGGAGGCCAAGAAGGAGCTGCTGGAGCTAGCGTCACGCATGGCAATGTTCTTTCAGTTAAGATTTACCACTTGTTATGAGAATGAGCGTACAAAGGACATGATCATTGAACAACGTTTTCATCGAGCCATCATCGGACAGAAAGGGGAGAAAATTAAGGAAGTTCGGGATAAGTTCCCTGAGGTCATCATCAACTTCCCTGACCCAACGCAGAAAAGTGACATTGTACAACTGCGTGGGCCTCGCACTGAGGTGGAAAAATGCACAAAGTTTATGCAGAAAATGGTGGCTGAAATGGTTGAGAACAGTTTTTCTGTCTCAGTTCCCATTTTCAAGCAATTCCACAAAAACATAATTGGCAAAGGAGGAGCAAATATAAAGAAGGCGAATATTACAGAAGTAGAGGTGTCCATCCCCTCAAAACTACACAATTCCCTAATTGGTTCCAAGGGGCGTTTTGTGCGTTCCATCATGGAGGAGTGTGGTGGTGTGCACATCCATTTCCCAACAGAGGGCTCTGGCATCGATGCAGTGACAATCAGAGGCCCAGCGGAGGAGGTAGAGAAAGCCAAGAAACAGCTGCTGTCCCTGGCAGAAGAGAAGCAAACTAAAAGCCACACAGTTGAGCTTCGTGCCAAACCTGAATACCACAAGTTCCTTATTGGAAAAGGAGGTGGAAATATCCGCAAGGTACGGGACAGCACAGGTGCCAGGATCATCTTCCCTACTGCTGAAGATAAGGATCAGGAGCTGATCACAGTCATCGGTACAGAGGAAGCTGTAGCAGAAGCACAGAAGGAGCTGGAAGCACTCATTAAGAGCTTGGATAACGTCGTAGAGGATTCCATGATCGTTGATCCCAAGCACCATCGTTTCTTTGTGGCACGTCGTGGCCAAGTCCTGAGGGACATCGCTGATGAGTATGGTGGCGTTATAGTCAGTTTCCCTCGAACTGGCTCACAGAGTGATAAGGTCACCCTAAAGGGAGCCAAAGATTGTGTGGAGGCTGCCAAGAAACGCATGCTGGAGTTGATTGATGATTTGGATGCGCAAGTAACCATGGAGTGTGTGATCCCTCAGAAGTTCCACCGCTCCATAATGGGGCCGAAGGGCTCTCGCATACAGCAGATCACTAAAGACCACAATGTGCAGATCAAGTTTCCAGACAGAGAGGACCAGCAAGCTCCATCAGCTGATGCTCCAGTTCAGGAGAATGGAGAAGCTAATGGAGAGGTGAAAGAACCTGTTGATCCTTTGGCCCCAAAGAAGTGTGATGTCATTGTGCTCTCTGGCCGCAAAGAGAGGTGTGAAGCTGCTGTTGAGGCGCTAAAGGCTTTGGTTCCTGTGACCATTGCGGTGGAAGTGCCTTTTGAGCTTCATCGCTACATCATTGGCCAAAAAGGAAGTGGAATTCGCAAGATGATGGATGAGTTTGAGGTTAATATTCAAGTGCCTGCTCATGAGTTACAGTCTCACATTATCTCCATTACTGGCCTGTCTACCCACCTTGACCGCGCTAAAGAGGGTCTTCTTGAGCGTGTCAAAGAGCTACAGGCTGAACAGGAGGATCGAGCTCTCAGGAGCTTCAAGCTGACCATCACTGTGGATCCCAAGTATCACCCCAAGATTATTGGACGCAAGGGTGCTATAATCACCCAAATCCGCAATGAGCATGAGGTCAACATTCAGTTTCCAGAGAAAAATGATGAGAACCAGGATCAGATTACCATTACTGGCTATGAGCAGAATGCTGTGGCGGCACGTGATGCCATTCAGGCTATAGTGGATGAACTGGAGGAAATGATCTCTGAAGACATCACCCTGGACAGCAGAGTCCATGCTCGCATCATAGGGGCACGTGGCAAGGGAATCCGCAAGATCATGGATGAGTTTAAGGTTGATGTTCGGTTCCCTCAGAGTGGAGCTGCAGATCCAAATTTAGTGACTGTGACTGGCCGTCCAGAGCATGTTGATGAAGCCATTGATCACCTTCTGAACCTGGAGGAAGAATATATGTCTGACGTAGTTGAAAATGAAGCCAAAATGGCCTATATGAAGCCTTCTGGTTCCACTGCCTCTAGCATGGAAGAACCTCGTGGCCCATCCAAGGGCTTTGTTGTGCGGGAGGCTCCTTGGACCACTGGCAGTGAAAAGGCTCCGGATATGAGCAGCTCTGAGGAATTCCCCAGTTTTGGTGCACCTGTGGCTACTGCAAGATCATCTCCATGGGGACCCAAACGTTTTTAAAATGTGTCCTTCAATGGTTATGTTGCAACCTCCTGGTTTTCCCCTTACTATTATCCCTCATTTTACCCATTTGGATGTGGACTGACCACTTCCTCTGACCCCCAATATATCAGCACAGTTCCTCTGCTCAAATTACTTCTGCTAATAAGGGTCTTGATGATTCACAAATTGAAGGAAAACAAAAGTACTCCTGACCATGCTTCAGATCTGTAATGATCCAGGTTTAAGTGATTTTTGATATGACTTAATTACAAAAACATTATTTCATTACAATGGTTATTTTCTGGGTTTATTAAGCTGCTCTGTCTCATAGTTGCCTTTGCAATGGGGTTTGGGAAAAATATACTGTATACCTCTGAAAGATGTTGCTTCTGGTTGAAGTCAGATTCATTCATAGGAAATGGGTAACCAGCTGTACTTTTGCCTCGTTCCCTAGGGTAGCCATTTTGTTGCAGACATTTCGCTTGTCTCTGTCACCATCCCTGATTTCCTGACTCCGGGAACGGATTCCATGCAGCCTTTACAACTTTCCGACTTAAAAGAGGGACTTTCACTACAAAAGTATTTTCAAACTGCCATTTGCTTTGGAAGTCCCAGGGATGTAGTTGCTTGTGCAGTAGAAGTCCCATGGTTCCCCAAAGTCTCTAAAGCGTACACTAAACAGCTTATTCTTTTTCATTTAGTTTTTGATATTCAGAAATTGTTTATTAAAGATTATAATATTTGGAAGGATGGGGAAAAAAAAAACCATTTTGTGCCAATGAAATGTCAAGTAATGTCATGTTTTACTCATTCTTGCTAATGGGTCAGTGTCCAGCCCCCTTTTTTTGTCTTCCAATTGCTATGCAGGTTGGTCTGAAACCATAGCAATGGCCCTCTTAATAGCCTTATAAGAATTATGCAAAAATGACAAAGGAAACGATTATGGATAACACTGGAAAATAAA

Function

symbol description
hdlbpa Predicted to enable mRNA binding activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be part of polysome. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; immature eye; and pectoral fin. Orthologous to human HDLBP (high density lipoprotein binding protein).
hdlbp Enables RNA binding activity and cadherin binding activity. Predicted to be involved in cholesterol metabolic process and lipid transport. Located in cytosol.

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_02172629_02189732.mRNA True 4794 mRNA 0.47 27 2171683 2189732

Neighbor

gene id symbol gene type direction distance location
CI01000340_02008099_02012700 SOX14.S, SOX14 coding downstream 158983 2008022 ~ 2012700 (-)
CI01000340_01952181_01975472 NA coding downstream 195397 1951515 ~ 1976286 (-)
CI01000340_01916883_01917263 NA coding downstream 254331 1915653 ~ 1917352 (-)
CI01000340_01894781_01909824 HS2ST1 coding downstream 260324 1894674 ~ 1911359 (-)
CI01000340_01839512_01846883 NA coding downstream 324790 1838277 ~ 1846893 (-)
CI01000340_02293072_02301920 STK25B, STK25, STK25A coding upstream 103282 2293014 ~ 2302947 (-)
CI01000340_02329631_02332000 DTYMK coding upstream 139874 2329606 ~ 2332000 (-)
CI01000340_02333476_02337529 AGXTA coding upstream 143370 2333102 ~ 2337529 (-)
CI01000340_02341068_02348409 NA coding upstream 150771 2340503 ~ 2348477 (-)
CI01000340_02567081_02567521 NA coding upstream 377005 2566737 ~ 2567643 (-)
G488096 NA non-coding downstream 5443 2165992 ~ 2166240 (-)
G487971 NA non-coding downstream 179045 1990574 ~ 1992638 (-)
G487942 NA non-coding downstream 196809 1974362 ~ 1974874 (-)
G487929 NA non-coding downstream 230148 1941327 ~ 1941535 (-)
G487918 NA non-coding downstream 246254 1924278 ~ 1925429 (-)
G488101 NA non-coding upstream 4594 2194326 ~ 2194550 (-)
G488102 NA non-coding upstream 4968 2194700 ~ 2194971 (-)
G488103 NA non-coding upstream 5378 2195110 ~ 2195384 (-)
G488104 NA non-coding upstream 8005 2197737 ~ 2198034 (-)
G488113 NA non-coding upstream 23457 2213189 ~ 2218915 (-)
G487884 NA other downstream 269411 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 1380274 786551 ~ 791409 (-)
G485786 NA other downstream 1845967 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 2089588 62780 ~ 82095 (-)
G488782 NA other upstream 1816073 4005805 ~ 4006448 (-)
G488862 NA other upstream 2317464 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 2410488 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 3131021 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 3993558 6095704 ~ 6194501 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009184 hdlbp coding CM030126.1 CM030126.1 28463793 ~ 28480382 (-)