CI01000340_02936853_02939837 (BCL6A, BCL6)


Basic Information

Item Value
gene id CI01000340_02936853_02939837
gene name BCL6A, BCL6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2935637 ~ 2939837 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_02936853_02939837.mRNA
ATCTCGAAAAAATGGCTTGTGCAGCCGACAGCTGCATCCAATTCACGCGTCATGCAAGTGATGTTCTGCTCAACCTGAACCGACTGCGTAGCAGAGATATCCTCACAGATGTCACGATTCTGGTCAACAGACAACAGTTTCGAGCGCACAAAACAGTCCTTATGGCATGCAGTGGGCTCTTCTACTCAATCTTTACCGATTCACACAAATGTAACCTGAACGCCATCAGTCTGGACCCAAAGGTTGACCCAGAGGGTTTCGCAATCCTTCTGGAGTTTATGTACACTTCACGTCTCACACTGAAGGAGAGCCTTATCATGGCCATCATGAACACAGCCATCTACTTACAGATGGACCACGTTGTCGACACCTGCCACAGATTCATAAAGTCCAGTGACTCCTCCATCAAACTTCCCAGAGAGGATTTTCTGGTCAGCCCCCTGCTTTTACCTCAAGACGTTCACAGTTACAGACCCCATGAGATGATGGATAATGTTTCTGGACGGGCAGCGACTTTCAGAGATGGGAGACCTTATGGTGTTTGCATGTTTAACGGGGTCAACGCTCCTAACAGCTCATACCTGTACAGCCAGTTTCCCATGCAAGGTTTCCCTTTTCCTCTTTGCAAGCTTACAGACACCAAAAACACTTTCTCAGACTTCTCAAAGGGAGGCATCATCCATCACAAACACTGCTCTCCGGTTGACGGTAACAACTCTGTGCTGGCCGACTTCACCCGCAGCACCACCAGCGGGAGCACAACAGCTTGCCACGCAGGCTCGTACTCCTCAAGGGAGCTGGGAAGAGATGCAGAAATGAAGCAGGAGACCTTGGAGGGAGTGGTTCATTCGATCGGGATGAGCTCCAGGAAACATGGCTTCACAAGCCTGGCCCAAGAGCAGCAGAGAGAGACTGGGAAAGAGCAGAGTTCCCTGGCAGAGGAACATTTGAGCCACCAACACTACTCCATGGGCATATCCTCCAATGGACGCAAAACCCTGATGAGCAGCCCTCAGAGCCCCCTCAAATCAGACTGCCAGCCCAATTCCCCGACGGAATCGAGCAGCAGCAAAAACGCCGCCCTCGCGCAAGCCTCGCAACCTCCAACCTCTCAAGGTACACAAGACCCTAAAGCTCGCAACTGGAAGAAATACAAGTTCATTGTGCTCAATCAGAGCTCCAAGGAGGAGGACACCAATCCACGTGACCCTGGAATGCACTCCCCACCAAGGTCGGGCTTATCTGCTTTCCTTCACCACGTTGACTCTGAACATCCCGACTCGAAGGCAACGACAAAGATTAGCGAGCAAGGCGAGGACTTCACTGTGCCTCAGGCCAGTCGCCTGAACAACATAATCAACAGAACTCTGGAGGGATCGCAGAGGAACAGCGACAGCCACTCTTCTCTGTATATGAGCCATTTAAAGTGCTCGTCCTGCGGCTCCCAGTCTCCACAGCACTCTGACATCTGTCCCAACACGTCCGCCTCACGTCTGGCCGAGGAGATGTCTGAGATGCACTCCGAGTACTCTGATTCCAGCTGTGAAAATGGAACATACTTCTGTAATGAATGCGACTCCAAGTTTGCAGAGGAGGAAGCCTTGAAACGCCACACGCTTCAGGTCCACAGCGACAAGCCATACAAATGTGACCGTTGCCAAGCTGCATTCCGCTACAAGGGAAACCTTGCCAGTCACAAAACAGTTCACACCGGAGAGAAACCATATAGATGCAATATCTGCGGGGCTCAATTCAACAGACCAGCAAACCTCAAAACCCACACACGGATTCACTCAGGAGAAAAGCCATACAAGTGTGAGACATGTGGCGCTAGATTTGTGCAGTGTGAGAAATGCAACTTGCATTTTCGCCACAAGAGTCAGCTGCGGTTACACCTCCGGCAGAAGCATGGCGCCATCACCAATACCAAGATCCAATATCGCATGTCCTCGACAGACCTACCGACCGACTTGACGAAGGCATGCTGAGCAGGCACTTTGGGGCAGACCTGACCATGGCATTATATGACCTGACTTGTACAATCATTCAAAATTTTAGTGCCACACTGTGTTATTCGGACAAGAAAAAAAAAAACTGGCATGAAATGCCAGTCTAAACGGGTTTCCTCTACATTTGAACATAGAACCACAATATGGTCTCTTGTAGTCACTTTATTGTTTATATTTACATATGAATATATATATTAATGTTGGGAGCGTTTTTACAATTTGAGTTATAAAAAAGCTTTATTTTGTTGGAAGAAGGATGGAATGTAAAACATTTAAATCCGGTTTTTGAAAATACAGTATTTTCTAATGAAAAACAAAACAAAACATACTTTTCTGAAGGTATTGGGGATTTTGATCGAAGTTGGAAGTCAAACGCATTTCTCGCAAAGAATTGTGTGTCTATAGATTTTTATATATAAATGTACAGGTTACACTATGTTGGAACGACCTCTGTCTTATAAGAGGAACTCCTAACTGTGACTATAGCATTGAATATCTTACTTGGTTTTTGTTGTGTACTTTTGAGAATGATGGCTGCTCTCTCAAATGGAAAACATTGCATGAGGTGGGTTGCCGCTGATAAACTTTCACTATGTAGGTAACTGCATAAATATTGTGACAAAGTGTAATTACTTTACATCAAGATTGCTCTCTGCTGGCAGAGCCGATCTGGAATTACATGGTAACATATGCATTCAAAAGTAATAATAATGATAATAATAAAAAAAAAAGAAAAAAAAGAAAAAAGAAAAGGTACTGCTATGTTATGACCAAGGAGATATTTTGCTTCAGATGTATTTGTATAGAAACGTGACTTTTTATTTCTTTTGGCAAGTGAAGGTTTACAGTTTTGTTGTTGTTCTAAAAGCTACAGTAAAAGGTTATACTATTGTCTTTATTTTCTTTTTGTCTGTGTATACACTGTGTACTCAAGGTGCCTTTCTCAATGGTGTCTGAATTTCTTTTCATTCAGCCCAACTCTACTAAGGTACAACTGAAGGGCAACATGTCCTTTTTTTTTCCTTTTTGAGTGTGTAGACATGCGAGAATGTGTGACAGAAGGACGCCATGACTGCGCGTGTGTGCATGTGTGCTTTATAAATGCTTTTCACACACTTTAAGAAAAAAAATGCAACTCATTGCGTGAGCTATACATCTTCAGGACTTGTTTTGGGATTGGGCTTTTTTAAATAAA

Function

symbol description
bcl6 Enables several functions, including DNA-binding transcription factor activity; chromatin binding activity; and identical protein binding activity. Involved in several processes, including negative regulation of cell growth; negative regulation of transcription, DNA-templated; and positive regulation of regulatory T cell differentiation. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in Golgi apparatus; nucleolus; and nucleoplasm. Colocalizes with replication fork. Implicated in B-cell lymphoma and diffuse large B-cell lymphoma. Biomarker of diffuse large B-cell lymphoma.

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K15618 BCL6; B-cell lymphoma 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_02936853_02939837.mRNA True 3204 mRNA 0.45 7 2935637 2939837

Neighbor

gene id symbol gene type direction distance location
CI01000340_02567081_02567521 NA coding downstream 367994 2566737 ~ 2567643 (-)
CI01000340_02341068_02348409 NA coding downstream 587160 2340503 ~ 2348477 (-)
CI01000340_02333476_02337529 AGXTA coding downstream 598108 2333102 ~ 2337529 (-)
CI01000340_02329631_02332000 DTYMK coding downstream 603637 2329606 ~ 2332000 (-)
CI01000340_02293072_02301920 STK25B, STK25, STK25A coding downstream 632690 2293014 ~ 2302947 (-)
CI01000340_03342324_03363204 TOMM70, TOMM70A coding upstream 402464 3342301 ~ 3363619 (-)
CI01000340_03379959_03401892 GFI1AB, GFI1 coding upstream 439449 3379286 ~ 3401952 (-)
CI01000340_03403238_03403692 NA coding upstream 463386 3403223 ~ 3403692 (-)
CI01000340_03406706_03449487 EVI5 coding upstream 466637 3406474 ~ 3449487 (-)
CI01000340_03474617_03478517 FAM69AB, FAM69A coding upstream 534123 3473960 ~ 3478517 (-)
G488378 NA non-coding downstream 982 2934342 ~ 2934655 (-)
G488334 NA non-coding downstream 6952 2925754 ~ 2928685 (-)
G488371 NA non-coding downstream 27018 2905985 ~ 2908619 (-)
G488359 NA non-coding downstream 77394 2855259 ~ 2858243 (-)
G488346 NA non-coding downstream 102432 2832983 ~ 2833205 (-)
G488341 NA non-coding upstream 3384 2943221 ~ 2945567 (-)
G488384 NA non-coding upstream 24461 2964298 ~ 2964585 (-)
G488387 NA non-coding upstream 37254 2977091 ~ 2977767 (-)
G488388 NA non-coding upstream 38254 2978091 ~ 2978316 (-)
G488392 NA non-coding upstream 41507 2981344 ~ 3053730 (-)
G487884 NA other downstream 1033365 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 2144228 786551 ~ 791409 (-)
G485786 NA other downstream 2609921 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 2853542 62780 ~ 82095 (-)
G488782 NA other upstream 1065968 4005805 ~ 4006448 (-)
G488862 NA other upstream 1567359 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 1660383 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 2380916 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 3243453 6095704 ~ 6194501 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032893 bcl6aa coding NC_007117.7 CM002890.2 28216487 ~ 28222592 (-)
bowfin (Amia calva) AMCG00009217 NA coding CM030126.1 CM030126.1 29187536 ~ 29197143 (-)