CI01000340_03370316_03378878


Basic Information

Item Value
gene id CI01000340_03370316_03378878
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3370275 ~ 3379000 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_03370316_03378878.mRNA
GCATAAATATCTCTAAACAATTTGTTGAAGGAATTGCAATGATGGCCTTTAACACCAAAGTCACATATATCTACACAACAGAAAAAGATAAGCCTGGCAACAAGAAATTGCAACAAATAGAATATAGACCAATGCGAACTGTGACAGAGAACATGCGCATTATGCACATGCGCATTACATCCTCTTTCAGCTTGGGAAATTTAAAGGACGTAACGTTAGTTCACATCGCTACGAAGATATTCGCGATATGTGGGAGAGGTACGGCTTTCTTGCTAGTCACACTGGAGGAGTTTTCGGCTAAGCTTGAGAATACAGAACTTTTTGAGAGGATTGAGAAGTTTGTGCACGTCCATAGAAACAGTTTTCTTCTGCTTCGAGCCCCAGTCTATGGAAAAAGAGAGTGGGACATTTTCTCATCAGTGCAGAACAGGTGAATGATAAATTAAAAACTACAAATGTACAACCTTATTTTGAAAGCAAGCATGCCATATTACATACATGACCAAAAAGGCAGAGTTCTAGACATGGCATCGAGAGATTCTTTCAGACTTATTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_03370316_03378878.mRNA True 556 mRNA 0.39 3 3370275 3379000

Neighbor

gene id symbol gene type direction distance location
CI01000340_03320562_03329314 TP63 coding upstream 40593 3320469 ~ 3329682 (+)
CI01000340_03291151_03315214 NA coding upstream 54518 3290647 ~ 3315757 (+)
CI01000340_03242647_03264271 NA coding upstream 105425 3242647 ~ 3264850 (+)
CI01000340_03053157_03201683 LPP coding upstream 168592 3053157 ~ 3201683 (+)
CI01000340_02930635_02933799 LSM2 coding upstream 436385 2930635 ~ 2933935 (+)
CI01000340_03471633_03472401 RPL5A, RPL5B, RPL5 coding downstream 92633 3471633 ~ 3472451 (+)
CI01000340_03552817_03560264 NA coding downstream 173349 3552349 ~ 3560324 (+)
CI01000340_03601425_03606062 NA coding downstream 221493 3600493 ~ 3606138 (+)
CI01000340_03616496_03620617 NA coding downstream 237496 3616496 ~ 3620970 (+)
CI01000340_03662829_03666784 ACTL6A coding downstream 283760 3662760 ~ 3666784 (+)
G486972 NA non-coding upstream 93161 3276913 ~ 3277114 (+)
G486965 NA non-coding upstream 113459 3256094 ~ 3256816 (+)
G486948 NA non-coding upstream 148486 3221586 ~ 3221789 (+)
G486929 NA non-coding upstream 389371 2980586 ~ 2980904 (+)
G486858 NA non-coding upstream 405668 2964295 ~ 2964607 (+)
G486996 NA non-coding downstream 9297 3388297 ~ 3388511 (+)
G486997 NA non-coding downstream 12700 3391700 ~ 3392122 (+)
G486847 NA non-coding downstream 30173 3409173 ~ 3412656 (+)
G486856 NA non-coding downstream 142566 3521566 ~ 3523856 (+)
G486865 NA non-coding downstream 145404 3524404 ~ 3525115 (+)
CI01000340_00312480_00313262 NA other upstream 3057030 312212 ~ 313534 (+)
G485427 NA other upstream 3202641 163286 ~ 167634 (+)
G485373 NA other upstream 3256506 106885 ~ 113769 (+)
G487133 NA other downstream 594915 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 1020419 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 1285309 4659584 ~ 4669322 (+)
G489634 NA other downstream 3315221 6694221 ~ 6700788 (+)
G490645 NA other downstream 5659812 9038812 ~ 9043101 (+)

Expression


Co-expression Network