XLOC_013551


Basic Information

Item Value
gene id XLOC_013551
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 37541715 ~ 37551134 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027381
TTCTGGTGGTCCTGTtgcttttttaacagtgtagcatGTCTGGTAAGGTACCCAGATCACGCTGTTCCTGGAAGCATTGAAAGACTCCTGAGACCGCCGGCAAACCACAATGATCTCTTCATGCTGAAACCCCTACTTGAGATTCCAGTCTATGACTTCACGCTCCCAAAATATAAGCAGAGGAAGACATGGCTGGAAGCAGGGAAGCATGGTGTAAGCTGAAGTGGCTTGACATTTCAGGCAGTGTGGGGTGAAGTCAATACAAGAGCCACTGGTCTGAAACAAGCCTCCACTTATGTTGCACTTGCTGGAGGGCTGTAAACAGAGAACGACAATGAAAATTCGGGGTTTAATTACAGAATTACAGTCGTgcaataaaaattttatattggACTTGTTTATGAAATATGGGCACTTCTGGCAACGGTTAAGGCAtccattatgaaaataaaaggaaataTAAAATCTAATGTATTTATTAGGGCTGTCAATGTTAACAGGTTAAATGTGATTAATCTGAACAGGTTTATgcattattaattctttaatataaattaattagtttGCCATCAACGCAGCCATATAACTGTGTGATTGATATATGAATTATGACATAACGTGTGCT
>TCONS_00027382
TGTTTAGTGAGCATTACGCCATGATCACGCTGTTCCTGGAAGCATTGAAAGACTCCTGAGACCGCCGGCAAACCACAATGATCTCTTCATGCTGAAACCCCTACTTGAGATTCCAGTCTATGACTTCACGCTCCCAAAATATAAGCAGAGGAAGACATGGCTGGAAGCAGGGAAGCATGGTGTAAGCTGAAGTGGCTTGACATTTCAGGCAGTGTGGGGTGAAGTCAATACAAGAGCCACTGGTCTGAAACAAGCCTCCACTTATGTTGCACTTGCTGGAGGGCTGTAAACAGAGAACGACAATGAAAATTCGGGGTTTAATTACAGAATTACAGTCGTgcaataaaaattttatattggACTTGTTTATGAAATATGGGCACTTCTGGCAACGGTTAAGGCAtccattatgaaaataaaaggaaataTAAAATCTAATGTATTTATTAGGGCTGTCAATGTTAACAGGTTAAATGTGATTAATCTGAACAGGTTTATgcattattaattctttaatataaattaattagtttGCCATCAACGCAGCCATATAACTGTGTGATTGATATATGAATTATGACATAACGTGTGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027381 False 625 lncRNA 0.39 3 37541715 37548709
TCONS_00027382 True 593 lncRNA 0.39 3 37541715 37551134

Neighbor

gene id symbol gene type direction distance location
XLOC_013550 AL627088.1 coding downstream 126270 37409823 ~ 37415445 (-)
XLOC_013549 cep126 coding downstream 134480 37380125 ~ 37407235 (-)
XLOC_013548 yap1 coding downstream 186049 37283765 ~ 37355666 (-)
XLOC_013547 six5 coding downstream 289679 37245331 ~ 37252036 (-)
XLOC_013546 six9 coding downstream 300600 37237714 ~ 37241115 (-)
XLOC_013552 luzp2 coding upstream 285826 37836960 ~ 38088099 (-)
XLOC_013553 si:dkey-10o6.2 coding upstream 657921 38209055 ~ 38245062 (-)
XLOC_013554 caprin1b coding upstream 695806 38246940 ~ 38271298 (-)
XLOC_013555 NA coding upstream 738947 38290081 ~ 38297955 (-)
XLOC_013556 NA coding upstream 825544 38376678 ~ 38378205 (-)
XLOC_013384 BX323829.1 misc downstream 17999484 19542102 ~ 19542231 (-)
XLOC_013544 NA non-coding downstream 622728 36902021 ~ 36918987 (-)
XLOC_013543 NA non-coding downstream 654246 36849149 ~ 36887469 (-)
XLOC_013542 NA non-coding downstream 807813 36714639 ~ 36733902 (-)
XLOC_013541 BX950224.1 non-coding downstream 1076249 36455307 ~ 36465466 (-)
XLOC_013557 NA non-coding upstream 1208200 38759334 ~ 38768498 (-)
XLOC_013558 BX936456.1 non-coding upstream 1307985 38859119 ~ 38865170 (-)
XLOC_013559 NA non-coding upstream 1318269 38869403 ~ 38870587 (-)

Expression


Co-expression Network