CI01000340_03853070_03866459 (PHB2)


Basic Information

Item Value
gene id CI01000340_03853070_03866459
gene name PHB2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3853008 ~ 3866815 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_03853070_03866459.mRNA
ATATATATACACAGTTATCATAGCTCTTTTGCATCAGTAACAACAGATTAGAAACGGCAACAATGGATGACTTTTTAAAAATGAACGTGGCTTCCATGAAAGCATTGGCGCCGAGGGGACTAATTACTTCGACAGTGACAGTGTTTGTGAGTAAAAGGGTCTCTCCCCTGCGACTCTCTCGGTGTGCTCAGCAGCCTCGTGTGAGTGTGCTCTACCAGCTGAAAGACTCATACAGAAACTGGATGAATCTTAGAGATGCAGAGACAGGGAAGGTTCTTTGGCAGGGAACTGAAGACCTCTCCCTTCCTGGGGTAGAACATGAAGCTCGGGTTCCTAAGAAGATCCTGAAATGTAAAGCAGTATCCAGAGAGCTGAATTTCTCTTCAGTAGAAAAACTGGAAAAATTCCGACTGGAGCAAAAGGTTTTCTTTAAAGGCCAGTGCTTAGAAGAGTGGTTTTTCGAGTTTGGCTTTGTGATTCCTAATTCTACAAACACATGGCAGTCTTTGATAGAAGCTGCACCAGAGTCACAGATGATGCCTGCAAATGTCTTAACTGGTAATGTTGTTATAGAAACCAAGTTTTATGATGACGACCTTCATGTCAGCACGTCCCGGAGGAGACACTCTACATACCGAGTACTTCTTCTGAGGCGCTGTGACAACAGCATTAAAAAGGAACATTTTAGGAAAAAACCCAGTTTCAAGACAAATGATTACACCAGTTTTATGGCAGATAAGGACTTGTACATAAGAGCTATCATGCTCATGACGACCTGGAGGTTCATCCAGCACCTGAGAGATTTCGCGGGACGCATGTCCTCTGGCTCAAGGGGTGCTGGACTCGGACTGAAGTTATTAATTGGAGCAGGTGCACTTGCTTATGGAGTCAAAGAAGCAACATATACAGACCTGCAGATGGTGAACATCGCGTTGCGTGTTCTATCCCGACCGGTGGCTTCCAACCTTCCCGTCTTGTACCAGCAGCTAGGGAAGGACTATGATGAGCGTGTGTTGCCGTCCATTGTAAATGAAGTTCTGAAGAGTGTGGTAGCCAAATTCAATGCCTCCCAACTAATTACACAAAGAGCCCAGGTCTCTCTGCTCATCCGACGGGAACTCTTTGAACGTGCTAAAGACTTCAACATTATTCTCGATGATGTGGCCGTCACAGAGTTGAGCTTCAGCAAGGAGTACACAGCAGCTGTGGAGGCCAAACAAGTTGCCCAGCAGGAGGCTCAAAGAGCTCAGTTCTTTGTGGAGAAAGCAAAACAAGATCAGAGGCAGAAGATCATCCAAGCTGAAGGAGAGGCCCAGGCAGCCAAAATGTTAGGGGAGGCTGTCACAAAGAATCCCGGATACCTTAAACTCAGAAGAATCAGGGCAGCGCAGAACATTGCCAAAACGGTGGCAGCTTCACAGAACAAGGTGTACCTGAGCTCGGATAGTCTGGTTCTGAATCTACAGGACGACTCTTTTGACAAATTGTCACTCGGAAAGAAGTAACCCATTCAAATAGCACTCTCGTTCTAATTGTCAGAGGTTCTATTACAAGAAGCCGTATGTGTGTCCTTTGAGATGGCTTTTTCTGATTGGGTCACAAATGGATATGTCATTCCGGGCAAGAGTCATTAAATATCTAATGGTGTTGTCCTGGTCCGTCAGTTAAATTTGACTCCACAATTTGCTGATGATCAAAACACTGCAGATTTGTGTTTATGAATGAAGGCAGGAATGTACAACTGTACCAGATCATTTAATAATCAAGGTTGGTTGAAAAAAATCCATCCATTCTTTTAGGAATGATTTATGTCTTTGCTGAAAAATAATACAGTTGTATATGTGACACAAAATGACAGCTA

Function

symbol description
phb2 Enables several functions, including protein C-terminus binding activity; protein N-terminus binding activity; and protein dimerization activity. Involved in several processes, including defense response to virus; positive regulation of cell cycle phase transition; and regulation of transcription, DNA-templated. Located in several cellular components, including cell surface; mitochondrial membrane; and nuclear matrix. Part of mitochondrial prohibitin complex.

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K17081 PHB2; prohibitin 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_03853070_03866459.mRNA True 1861 mRNA 0.44 14 3853008 3866815

Neighbor

gene id symbol gene type direction distance location
CI01000340_03679908_03709888 USP13 coding upstream 142959 3679824 ~ 3710049 (+)
CI01000340_03662829_03666784 ACTL6A coding upstream 186224 3662760 ~ 3666784 (+)
CI01000340_03616496_03620617 NA coding upstream 232038 3616496 ~ 3620970 (+)
CI01000340_03601425_03606062 NA coding upstream 246870 3600493 ~ 3606138 (+)
CI01000340_03552817_03560264 NA coding upstream 292684 3552349 ~ 3560324 (+)
CI01000340_03908893_03911941 NA coding downstream 41945 3908760 ~ 3912526 (+)
CI01000340_03926585_04057475 DLG1 coding downstream 59770 3926585 ~ 4057475 (+)
CI01000340_04060349_04070533 MFI2 coding downstream 193487 4060302 ~ 4071410 (+)
CI01000340_04074777_04081250 LRRC40 coding downstream 207233 4074048 ~ 4081469 (+)
CI01000340_04249473_04264824 SHROOM2A coding downstream 382658 4249473 ~ 4266007 (+)
G487152 NA non-coding upstream 55022 3797064 ~ 3797986 (+)
G487037 NA non-coding upstream 313012 3539768 ~ 3539996 (+)
G486865 NA non-coding upstream 327893 3524404 ~ 3525115 (+)
G486856 NA non-coding upstream 329152 3521566 ~ 3523856 (+)
G486847 NA non-coding upstream 440352 3409173 ~ 3412656 (+)
G487125 NA non-coding downstream 993 3867808 ~ 3870067 (+)
G487184 NA non-coding downstream 12079 3878894 ~ 3879122 (+)
G487186 NA non-coding downstream 13193 3880008 ~ 3880250 (+)
G487187 NA non-coding downstream 13676 3880491 ~ 3880698 (+)
G487189 NA non-coding downstream 19009 3885824 ~ 3886230 (+)
CI01000340_02930635_02933799 LSM2 other upstream 921208 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3539763 312212 ~ 313534 (+)
G485427 NA other upstream 3685374 163286 ~ 167634 (+)
G485373 NA other upstream 3739239 106885 ~ 113769 (+)
G487133 NA other downstream 107100 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 532604 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 797494 4659584 ~ 4669322 (+)
G489634 NA other downstream 2827406 6694221 ~ 6700788 (+)
G490645 NA other downstream 5171997 9038812 ~ 9043101 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location