CI01000340_04249473_04264824 (SHROOM2A)


Basic Information

Item Value
gene id CI01000340_04249473_04264824
gene name SHROOM2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4249473 ~ 4266007 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_04249473_04264824.mRNA
AGATGGCTTTTCATGTCTCCATTTGGAATACAGCACTAGAGTCCCTGTCAAAGTTTTCTGAGCTCAGATTCAGACTATATGTGTCCTTCCCCCTTTTAACTCCATTCAGGAAGATGAAAATGGTGGATATTGTAGCACAGAAAATGCCATCAGAGAGTGACGTGCATATGGCCCGGAGCTTTCTCACGAAGATTTTACGAAGTTCCATGAGAATAGTTGTAGTGATGCTTGGTGATCTGTGTTTGCCATTTGTTTTACAGCTTTTCACAAGCAACATTTTATTGCCTTGTTTTCTAATTTTCCTTTTCTTCTCTACCCATTTCTCTATCCTTATTTCTTTCCCGTTTGCTGCCCACAGGAGAAATGAACCCATGAGCAGACCTCACTCCTGGCATGCCACCAAATTCAACGAGAGCCACTCAGAAGCCAAAACCCAGTCCACACCCTCACCAGTCTGGCAAACAAGATATGATGCAAGTTCATTCTCCTCTGAACTCTCAACTGACTGGGAGCAAACAAATCTACAGAGAGTATCTGATCAGTTCAGCTCTTTGGGGAGTATGGACAGCCTAGAGCATAGCTCTCATCCCTATCCACCTGGCTGTCTTTCCCCAAGTAAGTCCAACAATAACAGCATTGAACATTTGGGCGGTGGTAAACGAGACTCTGCATACAGCTCCTTTTCTACAAGCTCAGGAACCCCAGATTACACACTGTCTAAAAGTAACGCTGCATCCACTGAAAACATGCTGTACAAAATTAATCAGTGGGACTCAAGTGGCAGGCACAGCAATGGCAGGCATAGCCAAAACTTAAACGAAGGGGTACGACAAGATGAGAGGCTTGGATACTTGCAGCATCTCTCAAGTACAGTTAACCATGAGATCCCAAGAGCCGAAGAACAGCCAGGAACTCGGCATTCAAACTCTGGAAGAGTTAGTATTGGACCTGTCTGGCATGTCCCAGATATGAAGAAAAACATGGTATCCTGTACCCCACCTCCCACTCCACCGACACGCAGTGATAGTTTTGCAGCCACCAAGGTTCATGAAAAGGGTCTGATCACAGGCACCTCCGAGGGCCTTGGTGGTCATGCCCAGTTAAAGCCTCAGGTGAAAGCATTACAAAAGGCTGGAGAAACCTATGAAAGCACGCAAAGGTCTCACCAAGTCTTCGAGACAGGTCTTGAGAGTCGACGCGATTTTAACCTGCCATCCAAAAATGATTCTTCAAATTCTTGCATTTCATCCAATGCCTATCATCAGTATTCCAACAGTATGTCATCAGACAAGACATACTCCCTATCAACCACAGATGTCAGAGATAGACATCCATCTTATGCCCATTTTCCATACCATCCACGGCAGTACAGCGACGAGGGCACTTTTCACGCTCAAACTAGGACAGTGCCAGCAGTGAATCCTCCATTCAGTGGCTACTTTAGTAGTATGCAGGAGCTGCCCACAAACAACCACATGCAACTCAACAACCAGAATCAAGCTAAACGGCCAGCTGCATCACTTTGCGGTCTTTTTGGGGTTACCTCCCACCATATCACTCAGGGAATGACACAGGTTTCTTTAGTGAGAGTTGATGACTCTAAAGCTTCTGCAGTCTCAGAAATGTCACACAGTGGACGGGACAGGATGTCCATAGGTTCTCAAGGAGGAGCTAAAGACCGCTATTTCCCTCCTCAGTCACAGCACCATGATACAGATCATAAGGACAATAATGTCTCCTTCAAACAAAGTGACAACCACCATCGCATTTTATCTGCTCCATGTAATCCCTTGAATATGCCCGATTCAACAAAACCTTCTGAGCTGAGGGGGAGCCAAAAGCAACATTATATGTCTGGCTCAGATGAGCATTCTAGTAGTTATCCCTACAGTAAGCAACCTGAGCACAGGAGAAATGCTGGCCATCTCCATCATAAAGAATACTCACAACAACCTCTTCCAAATAAAAGCGAGACAAAGATATGTCCCCAAAAAACACCTATGTTGTATTCTCTGGCCCAAGAGCGCAATGACATGGATGACTGTCAAGATGAGATCAACAGTGGAAGTGCAGAACAAGAAGCCATTGACAGTCAGAGCAGCAAACAGGCAAGACGGAGTGACCGTTTTGCCACCACCTTGCGCAACGAGATCCAGATGAGAAGGGCCCAGCTTCAAAAGAGTCGAAGCGCAGCCACTTTAGAAAGTCCGGTTGAAGCTGTAGAGGCGGCTGCTGTCTGGAAGACCACTTCTCCCTCTACGGATGGCTGCTTTTCTAGCTCTTATAAAGACCATCTGAAAGAAGCCCAGGCCAGAGTCCTCCAGGCTACGTCTTTTAGGCGAAAAGACCTAGAGCCAGTATTGTTCGAGCATCCAGGCACTGAGGGTTCTACTTGGAATGACACAACTCCGCTTCCAAGTGTCTCCGAAGTCCCACCTAGCAAACCCACCTCAGGGAGTAATCAGGTGCTTCGCATTGGTAGCCGCAAGCGGTTTTCTGCAGAAAAGAAAGTTCGGTCTTTTTCTGAGCCAGATAAAATTCATGAAGTAGGAGCTGATGAGCGCTCCCCTATGCCTGACAATGCTGTACCTTTAGAAAATCGGCACAGATTCTATGAATCAGCAGGAAAAGCAGCTTTCCCTAAACCTATGCCAAAGCAAAACCTGCAGATATCTGAAGACAACAGACTGTCCAAATCTGGAGGCATGCACTATTCTGCAAAGAGTGACACGGCAGGGCGGAGTAAAAGTGATAGCTCAACCCCCATTGAACAGTACCTTAATGGAGGTCAGGATGACCCACTCTCAGTGAACCGACAAGCCATGCTAGAACAACAGCGACTTGGTACCTTTGCAGAGTATGAAGCCAAATGGAACATCCAGAGGAAGACGACTGAACCAAGGGTATCTGGACGATACCACTCCGCTGACAACATCCTTGATACAGGAAAAGAGGGACAGAGTAAACCCAGCTGTGTGCATGAAAGATCCAGATCCTCCCCTTCTGCTGACTTCTATGGACAGAAACTACCAGTTCAAGAAAAGAAGACAGCTGACTATTCCAAACCTGAGAAAAATCTCTCTGAACAGGATAAGAATAGTACAAGGTTAAATGAAAAAGGATACAGTGAACTCGTATGCAAAGAGAAACTAGAAGCACCTCCCTTAGCTTTGACTGAAGACCTGGAGAAAAAGACTTTAGATCCTTTGTCCAGTCATCATAAACCTGCACTGCATTTCTCTGACCATAGCACTCAGAGTGAACCATCAGCCCTCTCCAAAAACAAGAGCTCTGTTCTCTTGCCCCATCTGGAGAAGTACAAATGCCCTGAGGGCACACCTCCTCCTCTTAGCAATTTTCAGGAGGTCCAGCCTGGATCACAAGGAGGAGTTTTGGCCTCACTCTCTCCTGTCAACAATCAAAGCTCCGCCTCAGTTTCAGCCCCCATTCCCTGGAAGGGGTTGGAGCAAAGCAAAGGGCCAATCAGGGAGGAGGAGCTACAACAAGAGCTTGTGCCTCCTCCCTTTCCACCTCCTCCCCCTCCCGCTGTCCTGCCCACCCAACAAACCGCTGGCCCTACCCAGCCCACCATGGATGGGCAGCGTTCGCCCTCGCCCCAGTTTGCTCCCCAGAGGCTGACTGACAAGCCCCCCGTCTCTGTCTCCATACAGGATGAAGCTCCTGGAAGGATGGACAGAGTTAAAGATGAGAACACATCAGTGAAGAAAGTGCCCATTAAGATTGTCCACTCAGAACGTAACACTGAAAAAGAAGGTCGACAATATCTCGACCTGCCCAGTGAGACCCCTGTCAGCTCGCAAGAACCTGGAGTAACTCATCTTCAGAGCTTGGGAAACCCGGATCAGTCATACTCTCTGTTTTGTACCTACACCAGGCAAAAGGACCAGGGGCCTGAACCAAGAGACACAGATATGGGCCCTCTGAAAGACCAGGGGCCACAAACCAATGTGAACCCAATATTCAATGAGTTACATGGCCTGCAGACAAGCCCTTCATTAGATCAAAGCAGCAACGGATTGTCTTCACATCCCTTGCAGTTAGAGGATGACGAAAAAAGAAAGGAGCTGGCTAGAGACATAATGGACAAGGACAAGTCCCTAGTGGACATTTTAGACCAGAGTAAGATGAAGACAACTATGGATCTGATGGAGGGTATTTTCCCTCAGGGAGAGCAGCTACTGGAGGAGGCCCAACAGCGCAGAAAAGCTGCACCTAAACAGCTCTCCCCTCGTAACTCTGTGGAGAAGAAAGAGGAAGACAACCTGGTGGTGGCTACTGCTTTAGTGACTAATTCAACCTATTACAGTACATCTGCACCCAAAGCAGAGCTGCTGAATATGATGAAGGACATGCAGGAACAGAGTGTGGAACACAACTCAGAAGAGGAGTTGGAGGAGGACAATGAAAGTGATCTTGCCAACAAGAAGCATGAGTTGATTGACAGCCTCAGCAAGAAGTTGCAGGTGCTGAAGGAAGCTCAGGAGAGTCTACAGGAGGACGTGCAGGACAACAACGCTCTTGGGGAAGATGTGGAGGCCATCGTACAGGGTGTCTGCAAGCCCAATGAACTCGACAAGTTCCGTATGTTCGTTGGTGATCTTGATAAAGTGGTCAACCTTCTGCTGTCTCTGTCTGGACGTTTGGCCAGAGTAGAGAATGCCCTGAACAGCCTAGAGGAAGATGCATCACAGGAGGAAAGGCATACTCTGACAGAGAAACGCAAACTGCTTATCCGTCAACATGAGGATGCCAAAGAGCTGAAGGAGAACCTTGACAGGAGAGAGCGCGTGGTCTACGACATCCTGGCCAGCTACCTGCCGGAGGAGAGCATGGCTGATTATGAGCACTTTGTGAAAATGAAATCTGCCCTTATTATTGAGCAACGCAAGCTTGAGGACAAGATCAAACTGGGGGAGGAGCAGCTCAAGTGTCTGATGGACAGTCTCCCAATGGACCAGAGGACAACTAACTAAGGACTTAAAAAATGATTTGTGCTGTAATCCAGAGCAACTCGCTTGACGTCACCCTAAATAACAGGGTTCCAGTACTTTGTCCATTTACTGCCAATAGAATTGCATTCTGGTCATATATTGTCTGACCCAGCAGAGAGCATTTTGGCAAGACTCATGAAGACCCTGAAAGTGCTGGGCACTTTCAGATCATGATTTGACCAAACCTGATTTTACAGAGCACACTGTGGTCGTTACCATTTTTAGTGTCAGCTTTTATTTTAGTGTCTTTTATGCTTTCGTGACCTTTCAATGTTACACGACCCATAGAATTATATGGTGAAATAATAATAAGAATAATTTTTAAAGATACTTAAATTTTTTCCACAACTGTTTAAATAGACCTTGCCCTTTTTGCACAAATGTGCTCTCAACACTAGACACTCTGTATAAACATGCTATGGTCACTCGCTGTGCTGTATCTTTTTAACCACTAGAGGGCAATGAAAGACACCTTAAAGTGTATGTGCCTGAAGCCCAATACAAACACTAGAGATTCAAACATACACTCAAATCCTGGCGTCATAAATTTTTCACCCAAGCTTTGCACATGTAAACTGTGTTGCTATTTGTATCAGGAGGTTGTAATTAACTTCCGAAACTGACTGGGGGGTGCATTATTTCAAATGACATGTCACTATCCTGATCATGTTAAAAATATTTCAGTGATATTTTTAGTAATTTATTTTAGCCTTTTGAATCTTTGTATATAACTAGAATAGGCTAGTATTATACTCTTTCACTTTATTTTAGCCAAGCAAACTACCACTTTAGTCTGCACGCTTTTTATAGATGAATATCACCGTAAAATAGATTGTAACACCAGAAGTAGGATTGACTGTAAGTATTCTATGGCTTAAAGAATCTAAGAGACTTGCCTAAACTATATAATATTATTTCACTAAGGATTCAGTGCTTGTCTATAAAATACCAGCTGCCTTTTGCTCAAAGTTGTGTCTGTGTCATTTATTATTTCATCTGTAAGGTTTTTGGGGTTTGATATTTTAGAGGTCTCAAAATGAGGAAAAAAGCATCATGTTCTAGTCTAAAATGTCCTGTATATTTACACAGAAACTTAAACAGTAATGTAATGCAGTAAGTAGTCACAATTCTGCTTGAATTGTGGCCTTATTTCCACAGATAGCTA

Function

symbol description
shroom2a Predicted to enable actin filament binding activity. Predicted to act upstream of or within apical protein localization and establishment of melanosome localization. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in central nervous system; mesoderm; and somite. Orthologous to human SHROOM2 (shroom family member 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_04249473_04264824.mRNA True 6177 mRNA 0.45 9 4249473 4266007

Neighbor

gene id symbol gene type direction distance location
CI01000340_04074777_04081250 LRRC40 coding upstream 168004 4074048 ~ 4081469 (+)
CI01000340_04060349_04070533 MFI2 coding upstream 178063 4060302 ~ 4071410 (+)
CI01000340_03926585_04057475 DLG1 coding upstream 191998 3926585 ~ 4057475 (+)
CI01000340_03908893_03911941 NA coding upstream 336947 3908760 ~ 3912526 (+)
CI01000340_03853070_03866459 PHB2 coding upstream 382658 3853008 ~ 3866815 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding downstream 7590 4273597 ~ 4274533 (+)
CI01000340_04310811_04341754 WWC3 coding downstream 44804 4310811 ~ 4341754 (+)
CI01000340_04374493_04379773 TTC22 coding downstream 108309 4374316 ~ 4380485 (+)
CI01000340_04387653_04393950 NA coding downstream 121646 4387653 ~ 4394119 (+)
CI01000340_04399692_04401164 NA coding downstream 133545 4399419 ~ 4401496 (+)
G487203 NA non-coding upstream 220806 4028376 ~ 4028667 (+)
G487202 NA non-coding upstream 221107 4028122 ~ 4028366 (+)
G487201 NA non-coding upstream 222627 4026596 ~ 4026846 (+)
G487200 NA non-coding upstream 226320 4022568 ~ 4023153 (+)
G487198 NA non-coding upstream 279380 3969769 ~ 3970093 (+)
G487253 NA non-coding downstream 81361 4347368 ~ 4347575 (+)
G487255 NA non-coding downstream 84813 4350820 ~ 4351036 (+)
G487256 NA non-coding downstream 86310 4352317 ~ 4352552 (+)
G487257 NA non-coding downstream 87303 4353310 ~ 4353517 (+)
G487258 NA non-coding downstream 87663 4353670 ~ 4354102 (+)
G487133 NA other upstream 266928 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1317673 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3936228 312212 ~ 313534 (+)
G485427 NA other upstream 4081839 163286 ~ 167634 (+)
G485373 NA other upstream 4135704 106885 ~ 113769 (+)
CI01000340_04660938_04668996 NA other downstream 398302 4659584 ~ 4669322 (+)
G489634 NA other downstream 2428214 6694221 ~ 6700788 (+)
G490645 NA other downstream 4772805 9038812 ~ 9043101 (+)
G490826 NA other downstream 4859177 9125184 ~ 9131397 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032109 shroom2a coding NC_007117.7 CM002890.2 30430591 ~ 30456075 (+)
bowfin (Amia calva) AMCG00014182 NA coding CM030128.1 CM030128.1 3527017 ~ 3554734 (+)