CI01000340_04387653_04393950


Basic Information

Item Value
gene id CI01000340_04387653_04393950
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4387653 ~ 4394119 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_04387653_04393950.mRNA
ATGTCTAACACAACAGTCAAACAGAAGAGACACTCTTTGAACGTTGCCAAGTCATCTAAAACACTAAATGTATCATCTGGAGTATTTCGCGCGAGTAGAAGCATTTCAAAGACCATTAACCCTTCAATCAGCGGGAAGAGCTTCAGTTCGGCAGGTGACAGTAAAGTTCTAGACAAGAGCTCGGCCCAAACACCAAAACACACTATTCAGGTGTTTGATGAACATGGGCTGGACGTTGCTCCTCGCCCATTATATAATCCAGATCCTGGGGTTTTACAACCTAAACAAGGAAAAATATTTCCTGCGCATGACACGTCATGGACTACCATGACAGACTTTCCCTCGGTAGCCTTCCAGACCACCAACGCAAGCTTTACTGGACCGTTTACAAGGTCTTTTTTTGGGAGCACATCCAGAACAAGCCTGACAGCGGAATCGGTGACTGATGAAACTAAAGACTTGTTAGTGAAACAGGACTTGTCCAACAGTCTTTCAGATGTTCAGGTTCGTAAAGAGGAGGTGAAGGAGCAGGTCAGGGAGGACATATTGGACAGTGTGCTGGATTGTTACCTGACTGAGACAGAGACCATCTGGCTGCTGGACATTCCTGCAGTGTCCGTGTCTGTAGATTCAGAGGATGCTGAGGCAGTCAAGGAAAGGAACAACGCTTACACAGAACTGTGCAAAAACAGACAGGGCAATGATAAGTATGTGGAACGCTCAATGCAAACATTCAGTGGTGCACCAAAGACGAAAGAGGTCCAGTGTGATAGCATTACAATGGCAGACAAAGGTGTCATGGCCACCATCTGGGACATGCATGATTCATTCCGCAATAAAAGTGATGTCGGTGGAAACACAGCAGTGTCTGCTCAAGAAAATACGCCTGCTGTCCCAGACTCCTCCATGAGTTACCTCCTGAACCCTAAGGGTTCTGACCAGAGTATGTCTATGGTCAGCCTCACCAGTACAGTTAGTGGCTCAAGCACTCAACTTGAAAAGATGTTGTGTGTGCTTCCGGTGGAGGAAGAGCCAGATCTTGAGCTGATCTTACAGTCAGACAAATTAAAGCAGGACCTGGCAGTGATGGAAAAGGTGGTTCTGGCCAATATCTTCCAACCCAAGCTTGCTGCATACAGACAACTGCCTATAATAGAGGACCCAGACTGTGTGCGGATGGCAATGGGGTCTGAAAACTCCCTGAGCCCATTCCTTGAGCATCTCTGGGCCTTTGAGTGTGAACTCACCATGGGGCGAAATGTCAGCTGTATGACCTGGAACAAGAAAAACCCATGGCCTGATCGAATCTATCATTGTGAGAGTGGAGTCACTGCACTGGATTTCTCAGCTTGTAATGCCAATCAGCTGGCAGTAGGCATGCATGATGGCACCATTGCCATCTATAATGTACAGGCCACAGAACAAACACCCATCATTGACAGCAGTGACTGTGCCAACATGCACACGTGTCCGGTGTGGCAGCTCAGATGGATTGATCATGAGAGTGGTCTAAGTGGAGAGGATAAAGGGGAAATACTCATCTCTGTGTCAGCTGATGGAAGAATCAGCAAATGGGTCCAGTACAAAAGCCTGGAATGCGTTGATGTTTTCCTGAGTTGTTCCTCAGATTGGACTATTCAACTCTGGAGACAGGACCTCCAGACACCCGTGCTTTGTTTTAACTCTAAACAGAAGGCTGTGTTTGATATCATGTGGTCTCCGCACTGTGCTACTGTCTTTGGAGCTGTCAGCAAGGGTAAGGTGGAAATCTGGGACCTGAGAGTCAGTAGTCTGGACCCGACAATTGTGAGCGAGACCAGTTCAGGAGTGAATCCCACAGCTCTGCTGTTCACCACTGAGACAGACTGTGTTCTGGTGGGGGACAGTGAGGGGGGGGTCACTGTGTACAAGCTGAAGAACCTCAAACCTGGAGGCAGCACACAGGTGGAGACGTTGGAGGAAGTAATTCAGTCCACGCTGTCCAGTCAACACTGAGGAGCATTAGGAAAGACTGGTACAGGCTCATATAAGGATCAGGCTGTTTGTTTTTACCTATCCATCATCATAATCTATATCCTCTGGCAGACTGAGTGACTCCATTTTACATAACAATGGGATTACAGTATGCATGCCTGTTTGTGCCTTATTGTCCATCCTTGTAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_04387653_04393950.mRNA True 2164 mRNA 0.48 14 4387653 4394119

Neighbor

gene id symbol gene type direction distance location
CI01000340_04374493_04379773 TTC22 coding upstream 7168 4374316 ~ 4380485 (+)
CI01000340_04310811_04341754 WWC3 coding upstream 45899 4310811 ~ 4341754 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding upstream 113120 4273597 ~ 4274533 (+)
CI01000340_04249473_04264824 SHROOM2A coding upstream 121646 4249473 ~ 4266007 (+)
CI01000340_04074777_04081250 LRRC40 coding upstream 306184 4074048 ~ 4081469 (+)
CI01000340_04399692_04401164 NA coding downstream 5433 4399419 ~ 4401496 (+)
CI01000340_04564752_04566790 NA coding downstream 170492 4564611 ~ 4567156 (+)
CI01000340_04660938_04668996 NA coding downstream 265465 4659584 ~ 4669322 (+)
CI01000340_04809014_04832590 JAK1 coding downstream 414895 4809014 ~ 4832590 (+)
CI01000340_05105114_05112407 NA coding downstream 710240 5104359 ~ 5112713 (+)
G487258 NA non-coding upstream 33551 4353670 ~ 4354102 (+)
G487257 NA non-coding upstream 34136 4353310 ~ 4353517 (+)
G487256 NA non-coding upstream 35101 4352317 ~ 4352552 (+)
G487255 NA non-coding upstream 36617 4350820 ~ 4351036 (+)
G487253 NA non-coding upstream 40078 4347368 ~ 4347575 (+)
G487280 NA non-coding downstream 33455 4427574 ~ 4429926 (+)
G487282 NA non-coding downstream 37980 4432099 ~ 4432647 (+)
G487289 NA non-coding downstream 46784 4440903 ~ 4491970 (+)
G487322 NA non-coding downstream 108427 4502546 ~ 4503214 (+)
G487323 NA non-coding downstream 109816 4503935 ~ 4504201 (+)
G487133 NA other upstream 405108 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1455853 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4074408 312212 ~ 313534 (+)
G485427 NA other upstream 4220019 163286 ~ 167634 (+)
G485373 NA other upstream 4273884 106885 ~ 113769 (+)
G489634 NA other downstream 2300102 6694221 ~ 6700788 (+)
G490645 NA other downstream 4644693 9038812 ~ 9043101 (+)
G490826 NA other downstream 4731065 9125184 ~ 9131397 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032113 wdr78 coding NC_007117.7 CM002890.2 30689239 ~ 30701207 (+)