CI01000340_04660938_04668996


Basic Information

Item Value
gene id CI01000340_04660938_04668996
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4659584 ~ 4669322 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_04660938_04668996.mRNA
CTATAAAATCAGGTGACGAGCAGTGCTGGTCTTGACGCAGCATTTCCAAGGGCTTGTATAAATCAACTTTGCAGACATGGACAGTGTTGAATATACTCACACGCACACAGTGGTTAAAAAGAGAACAATGCACCACATGATATGAAGAGGATGTGCCAGTTTTCATACAGCACACTGTGAGCAAAGATCTGATGGTTCCAGCTGCACTGGACATCATAAAATACTACAATGTCTAGTCGTAAAATACTGTATAAAAAATAAAAAAAAAAGGAAAGATACTTGTCATTTTGAAAGGCACAAATTGGGGATCCTCATTGCCACACCAGTACCATCAGGGTCAGAAGAGGAGACTCACAGATACAGTTTTTTTATTGAAACATGTAACACAAGGAATGAATCCGGTAAGCCAACTGTATCAGAGAAAGCCACTGATGCACCACTTAACTGGGAATTGAAAGTCTCTTTGTCCTTATAGCAGGTATGAAGGAATGAAGAGCTGTGCGTGTAAACCTCACTCCCCTGATCTCAAGAGGCGCTCTAGCAACTGATGGTAGAGACTGAGGTCTTTAGCCTCCTTGTTAGAGCGCCCGTCTCCCATGCCCGGGACCCGGGTTCTAATCCCGCTTAGAGCGGACAGTTCGAACAAGAGGGGTTACACAGGTTAGAACTAGGAGGGATGCTGGGAAATGGAGTCCAGAGTGTGGGAAGGAGGACAGGTGTTATCATGACATCTTTTAATTTTTACAAAGGCAGAATTGATTATATTAATCATCACTGTTACTTGTTTAAATTCCGTTCAGCTGTCTTATTATTGTCATTATATTGTACATCACCATTTATGCTACAAATTAACAATTCATTGTTGTTTTCACACATATGGGAAATGTTGGCCGATACATTACTATTAAGTTTGAATTCTTTAGCCTGTGCATGTCCAATTATTCGAAGTCATCTTGAACTATACACCATGCAATGTCAAATTATTAGATGGATTTGAATTTCTAAAATATGCTGCTACAGATTTAAAAAATCTGGACAGTATTCAAAGCTGCTGATAAAATGAACAGCTGAATGATCCACATGATTATGAGTTTAGTTATACAATTATGCAAGGTTATGCATTAGAGTTTCATTCATGAGTGTTTAATTTGGCAGACAAAACACTACAGAATATTCCAGACACTAAAAGCACACAGTCATTGCAAGGTGGTTAAAACATTTTTATGAACCTTAATGAAATTTTTTCACTGATCATTTTCATAATCAGCTTTGGAGTTACTCCACTTGGTAATAAAGCACTGATTAGACTCTTGGACTACTAATGGCTGAAAATCCCTAATAACGACTGAAGAAGATGAGGCTAGCGTGCCTACTCAGGGAATTGGGACAAGGCCAGTGTGTGCCAGTAAAGGCGGTTAGATTTTGGGGTTGCTCGCATGCTCATCGCACGTCGGAAAACTGCCGTCCTGTGCCGGAGCAAGAGCACCTAGCAGCCACATCAGTTTCATACAAAGTGTGTGTTCATGAACGATACTGTTGCAGAGCCAGGCGTATTTCCTGGGCAGATGATGATGAAGTGTCCAGTGAAACTCCAGCAGCATCACGCAGGGTGCAGAGTCCAACTTATATCACTGCAGACCAGCTAGCTCTTCTTTCGCAGAAAACTGCATTCCTAACAGAAACAGTGGAGAGAATTAGTAAGAACTATGTGACTGCTGACCAGTTTCACCTCCTGATGGAGAAGATGGAGCAGCTGCAATCAAAACTAGACAATGCTGTGGCCAAGGAGCCAAGAAAGCTGGAAGCAGCAAATCAGGAAAAGAGGCGAGGTCGGTCTCCCATACAAAGTGGAGCAGCACAAACCAAGTCCTACTCACCAAGTCCCAGCCGTGTTGGAACAGGTCTGTGTTATCACTGTGGTGAAGAAGGACATTTTCGCAGAGAGTGTGTGAGGCTGTCAACCCCACCACCTAACTCCAGTCAAAGTAGTAAGGAGCAGAACCGCAGTACTGCTCCAGGGGATGTAGTAAGCTGGAGAAGCCAGTCCCCTACACCACAGTTAGATTTTGGGGTTGCTCGCATGCTCATCGCACGTCGGAAAACTGCCGTCCTGTGCCGGAGCAAGAGCACCTAGCAGCCACATCAGTTTCATACAAAGTGTGTGTTCATGAACGATACTGTTGGTGAGTGCGCTGTGAACTGTGACTTACATCTGTGCAGAACAGTAAACTCTGTGAACGAATCCCCTTGTCGTGGCTCATTTCACCCGCGTTTCCCACTGCATCGACCCAAAGCAGTAGCACGACAATATATTCGATATCAAGAAAAGTGTTAGATATTGTTATGTTCTGATTTTGTGACAATGCATTATTTTGAACCATGGGTTATATTTTTAAATTTTCGCCAGCACAAGGAGTGTCGAATATGCTGGAATGTATCAACTCATCAACTTATATATCA
>TU559264
ATATTGTAGAAAAGAGAACATGGCCCCTTTAAGTATTTTAGTTACCCTTTCTGTGATCTAGTCTCTTATTGGTTGTTCAGTTACGCACTCTTTTGTATAGAGCGTAAAGTTACGTTTTTCTTCTTTAGTTAGATTTTGGGGTTGCTCGCATGCTCATCGCACGTCGGAAAACTGCCGTCCTGTGCCGGAGCAAGAGCACCTAGCAGCCACATCAGTTTCATACAAAGTGTGTGTTCATGAACGATACTGTTGGTGAGTGCGCTGTGAACTGTGACTTACATCTGTGCAGAACAGTAAACTCTGTGAACGAATCCCCTTGTCGTGGCTCATTTCACCCGCGTTTCCCACTGCATCGACCCAAAGCAGTAGCACGACAACTGGTGTCAGAAGCGGGGATTTATCTGGATGTGTTTGAAACTCCGTAAATTAACCCAGAGGGATTTTGGATATTGGCAAAATAACATATGACAACAGTGGATGTTGCAGTCGCAAGCTAATTTGTTA
>TU559265
CAACTTGCCACAGATTTCTTCCTCAAGGGGCTTCGTAACCAAAAGGTGGCTTATGAAGTAATGAACAGAGATCCTCATTCATTAGTGGAGGCTTAAAGACTTGTAGAGGCCCATGAGCACAATTATCGAGCCACCGTGGGACGTGATGTTGATGCAAAAAGCAGAGCCAGGCGTATTTCCTGGGCAGATGATGATGAAGTGTCCAGTGAAACTCCAGCAGCATCACGCAGGGTGCAGAGTCCAACTTATATCACTGCAGACCAGCTAGCTCTTCTTTCGCAGAAAACTGCATTCCTAACAGAAACAGTGGAGAGAATTAGTAAGAACTATGTGACTGCTGACCAGTTTCACCTCCTGATGGAGAAGATGGAGCAGCTGCAATCAAAACTAGACAATGCTGTGGCCAAGGAGCCAAGAAAGCTGGAAGCAGCAAATCAGGAAAAGAGGCGAGGTCGGTCTCCCATACAAAGTGGAGCAGCACAAACCAAGTCCTACTCACCAAGTCCCAGCCGTGTTGGAACAGGTCTGTGTTATCACTGTGGTGAAGAAGGACATTTTCGCAGAGAGTGTGTGAGGCTGTCAACCCCACCACCTAACTCCAGTCAAAGTAGTAAGGAGCAGAACCGCAGTACTGCTCCAGGGGATGTAGTAAGCTGGAGAAGCCAGTCCCCTACACCACAGGTGGGACGCACTACAAGTAGAGGCCCAAGCTTGCTCATTGATGCAACTGTGAACAGCATTCCAGTGAAAGCCGTTGTAGACACAGGAGCTGAAGCGACCGTTATCTCAGAAACCTTGTATCAGCAGTTTCCCTTAAATAAGCAGACAGCTTTAACACAGACATGTCTCCATAATGCAGAATCAGGGAAAGACATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_04660938_04668996.mRNA False 2460 mRNA 0.43 4 4659584 4669322
TU559264 False 504 lncRNA 0.44 1 4662295 4662798
TU559265 True 877 TUCP 0.48 1 4664309 4665185

Neighbor

gene id symbol gene type direction distance location
CI01000340_04564752_04566790 NA coding upstream 92428 4564611 ~ 4567156 (+)
CI01000340_04399692_04401164 NA coding upstream 258124 4399419 ~ 4401496 (+)
CI01000340_04387653_04393950 NA coding upstream 265465 4387653 ~ 4394119 (+)
CI01000340_04374493_04379773 TTC22 coding upstream 279099 4374316 ~ 4380485 (+)
CI01000340_04310811_04341754 WWC3 coding upstream 317830 4310811 ~ 4341754 (+)
CI01000340_04809014_04832590 JAK1 coding downstream 139692 4809014 ~ 4832590 (+)
CI01000340_05105114_05112407 NA coding downstream 435037 5104359 ~ 5112713 (+)
CI01000340_05165855_05175759 NA coding downstream 495924 5165246 ~ 5176372 (+)
CI01000340_05338225_05385755 DOCK7 coding downstream 668903 5338225 ~ 5385755 (+)
CI01000340_05433329_05446428 KANK4 coding downstream 764007 5433329 ~ 5446781 (+)
G487347 NA non-coding upstream 32554 4547919 ~ 4627030 (+)
G487326 NA non-coding upstream 125007 4533734 ~ 4534577 (+)
G487323 NA non-coding upstream 155383 4503935 ~ 4504201 (+)
G487322 NA non-coding upstream 156370 4502546 ~ 4503214 (+)
G487289 NA non-coding upstream 167614 4440903 ~ 4491970 (+)
G487444 NA non-coding downstream 49940 4719262 ~ 4719516 (+)
G487445 NA non-coding downstream 53145 4722467 ~ 4722672 (+)
G487446 NA non-coding downstream 57783 4727105 ~ 4727336 (+)
G487447 NA non-coding downstream 58382 4727704 ~ 4728019 (+)
G487470 NA non-coding downstream 111029 4780351 ~ 4789726 (+)
G487133 NA other upstream 677039 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1727784 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4346339 312212 ~ 313534 (+)
G485427 NA other upstream 4491950 163286 ~ 167634 (+)
G489634 NA other downstream 2024899 6694221 ~ 6700788 (+)
G490645 NA other downstream 4369490 9038812 ~ 9043101 (+)
G490826 NA other downstream 4455862 9125184 ~ 9131397 (+)
G490839 NA other downstream 4565651 9234973 ~ 9237559 (+)
G490896 NA other downstream 5162151 9831473 ~ 9845052 (+)
CI01000340_04660938_04668996 NA other downstream 1511 4659584 ~ 4669322 (+)

Expression


Co-expression Network