Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000340_04748822_04770480 |
| gene name | DNAJC6 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 4748281 ~ 4770480 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| dnajc6 | Predicted to enable clathrin binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle uncoating. Located in cytosol and perinuclear region of cytoplasm. Is expressed in hindbrain; inner ear; neural rod; otic vesicle; and spinal cord. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 19A. Orthologous to human DNAJC6 (DnaJ heat shock protein family (Hsp40) member C6). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000340_04748822_04770480.mRNA | True | 3471 | mRNA | 0.50 | 19 | 4748281 | 4770480 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_04685622_04711254 | NA | coding | downstream | 37027 | 4685450 ~ 4711254 (-) |
| CI01000340_04598932_04627160 | NA | coding | downstream | 120834 | 4598714 ~ 4627447 (-) |
| CI01000340_04586637_04588967 | NA | coding | downstream | 158918 | 4586379 ~ 4596261 (-) |
| CI01000340_04491232_04534682 | PDE4B, PDE4BA | coding | downstream | 213599 | 4490608 ~ 4534682 (-) |
| CI01000340_04403305_04410695 | SGIP1A, SGIP1 | coding | downstream | 337586 | 4403156 ~ 4410695 (-) |
| CI01000340_04787190_04796424 | AK4 | coding | upstream | 16458 | 4786938 ~ 4796424 (-) |
| CI01000340_04840574_04911814 | RAVER2 | coding | upstream | 68823 | 4839303 ~ 4914305 (-) |
| CI01000340_04918923_04993041 | CACHD1 | coding | upstream | 148134 | 4918614 ~ 4993274 (-) |
| CI01000340_05011408_05036816 | ROR1 | coding | upstream | 240803 | 5011283 ~ 5036816 (-) |
| CI01000340_05142661_05150544 | PGM1, PGM2 | coding | upstream | 371978 | 5142458 ~ 5150627 (-) |
| G488954 | NA | non-coding | downstream | 20116 | 4727686 ~ 4728165 (-) |
| G488951 | NA | non-coding | downstream | 25167 | 4722848 ~ 4723114 (-) |
| G488950 | NA | non-coding | downstream | 26226 | 4721841 ~ 4722055 (-) |
| G488948 | NA | non-coding | downstream | 30440 | 4717580 ~ 4717841 (-) |
| G488888 | NA | non-coding | downstream | 54649 | 4688014 ~ 4693632 (-) |
| G488876 | NA | non-coding | upstream | 27843 | 4798323 ~ 4798590 (-) |
| G488849 | NA | non-coding | upstream | 28317 | 4798797 ~ 4800530 (-) |
| G488965 | NA | non-coding | upstream | 224408 | 4994888 ~ 5003749 (-) |
| G488971 | NA | non-coding | upstream | 238173 | 5008653 ~ 5008993 (-) |
| G488853 | NA | non-coding | upstream | 319755 | 5090235 ~ 5132749 (-) |
| G488862 | NA | other | downstream | 152020 | 4507196 ~ 4518120 (-) |
| G488782 | NA | other | downstream | 741833 | 4005805 ~ 4006448 (-) |
| G487884 | NA | other | downstream | 2846009 | 1895801 ~ 1902272 (-) |
| CI01000340_00787534_00791061 | NA | other | downstream | 3956872 | 786551 ~ 791409 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | upstream | 550273 | 5320753 ~ 5330215 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | upstream | 1412810 | 6095704 ~ 6194501 (-) |
| G489511 | NA | other | upstream | 1549977 | 6320457 ~ 6327372 (-) |
| G491712 | NA | other | upstream | 4028721 | 8799201 ~ 8799577 (-) |
| CI01000340_10025958_10028902 | SRSF3 | other | upstream | 5251412 | 10025656 ~ 10029589 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00005215 | dnajc6 | coding | CM030140.1 | CM030140.1 | 19052978 ~ 19067107 (-) |
