XLOC_013554 (caprin1b)


Basic Information

Item Value
gene id XLOC_013554
gene name caprin1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 38246940 ~ 38271298 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026680
ATGCCCTCGGCAACAAATGGCACCAGGACTTTGAAGTCTGCCAGCCCAGACTTGGGATCTGCTCCCGGAGCAATGAACCAAATCACAGCCAGCAACCAGCTGACTGGAACCCAGTCAGAGGCAATGAAGCAGGTGATGGTGGTTCTTGAGAAGAAAGTGCGCAATATGGAAAAGAAAAAGAGCAAGCTTGATGACTATCAGGCCAGAAGCAGTAAAGGGGAACGTCTCAACCAGGACCAGCTGGAAGCCCTGTCGAAGTACCAGGAAGTAATCCATAACCTCGAGTTTACACGGGAGCTGCAGAAGAGCTTTTTGGCATTGGGTCAAGAAATCCAGAAAACTGTTAAGAAAGCGGCACGTCGAGAGCAGCTCCAGCGTGAAGAGAGTGAGCAGAAAAGGTTGAAGCGGGTTCTGGAGCTGCAGTTCGCCCTTGACCGACTAGGGGATGAAAGTGTGCGGCAGGAGCTGCTGCAAGGGGATGGGGAAACTTCACTACTCACTGAGAGTGACCTTACTTCCTTGGATGAGTTTTACAAGCTTGTGGGGCCTGAACGTGACCAAAACATCAGGTTGACTGACCAGTATCAAGAAGCATCGCAACACTTATGGGAACTTTTGGAGGGGAAGGACAAGCCTGTCGCTGGAACAACATATAAAGCTCTGAATGAGACATTGGAGCGGGTTTTGCAGAGCGGCTACTTTGACCGAGTGCAGGCTCATCAGAATGGAGTTTGTGTGGAGGAAGAGGAGGTGGAGGAGCAGGCGGCTCCAGTGGAAGCACCTGAACCAGAGGAACAGCCTCATGACACGGCAGAGGGTGAGATAACGGAAGAGTATCCAGAACCCATTCCAATTGAGACAACAGAGttTGTAAATAGGCAGTTTGTTTCGGAGAGCACGTATAGTACTGGTGAAAAGGAGCAAAGAGAAGACTGGAGCGTGGAACCTGAGGTGGTGAACTCAATACTGCAGCCGGTTCAGGCTGCCCCCATTCCTGTCGTCCCAGAACCTCATCCACTGCCCACAGTAACTCCAACACCCCCCTCAGACCCTGTGTGCAGACAGCAGGTGGTTCAGGACCTCATGGCACAGATGCAGGGACCATACAACTTTATGCAGGACTCCATGCTTGATTTTGATGGCCAGTCTCTTGATCCGGCTATTGTATCAGCACAACCTATGAAGCCAGTCAGTATGGAGATGCCACCAATGGTGTGTCAACCAGCTCACCCGGAGACTCATCTAGCACAGCCTCCAGCTGTTGGCGTTCAGCCAGAACCCACGCAAATACCTATGGTTTCTCCTTCACCAGAAACCTTCTCCACACCGCCACCGATGTATCAGTCCCCTCACACAGCTGATCCCAGACCACAGACAGGCTCGATTGACCCAATTCAGGCCTCCATGCCCTTGACAGAACAAACTCCTTCATCTGCAACGCTTCCTCCTGCCTCCCAAACCCAGGTGATCCCAAAACCCTTGCACAGCAGCGGCATCAATGTCAACGCAGCCCCATTCCAGTCCATGCAAACGGTGTTCAATCTGAATGCTCCTGTCCCACCAGCTAATGATACAGACTCCATAAAGCAGGCCAGCCAATATCAGAATAGCTACAGTCAGGGCTTTAATAGCCAGACACAGCTTCCTGTGGAGCAAACAGACCTGCCGCCAGAGCAGCTCCAGGCTGTAGTTGGTGCCTTCCATTCTCAAGATCAGTCTCTCCAGAACTCAGCTGCTCATCAGGTCATGTCTCAGCAGCAGGCAGGTGTTCAGGGCAATGGCTTCGGTCGCCAGGCTCAGTCCTTCTACAACAGCAGAGGCATGTCTCGTGGCGGCCCCCGCAACTCACGCGGCATCATTAACGGCTACAGAGGACCATCCAATGGCTTCAGAGgtGGTTATGAAGGTTATCGGCCACCATTCTCCAACTCTGCCAACCCTGGATATGGACAAACACAGTTCAGTACACCGCGTGACTATTCTGGCAGCAACTATCAGCGGGACGGTTACCAGCCGAACTACAAGCGTGGCTCTGGCCAAGGGACTCGCGGGGTCTCTCGAGGAAGCGCTCCAGCCATGCGCTCTTAAGCCTTGTCAACCTTTCATCTGGACCACAATGAACATTCGGATACTCAAGTGCAAATGTCCTGGCTCTCTTTCCCCCTCTCTTCGCCATGGAAACCATCAAGCAAATATCAATTTGACATGTTAAAATTGAGAAGTTCAAGCTGAAAACTGTGTCAATTTTAAAGTTTCCCTGTGTTTCTAACAGATATACCTGTGAACTTGAAagacttaatttatttttgttggttttttttGTATGAAATAAAACCTAAACCTGCTACAGCTGGTCCAAAAAAATGGGAGTTTTGTTTCTGCCCCTCTGTTTTTGTTCACACCAATTTGTTCTGGTTTTAAAAATCGCTTCTTTTGGTACATTTTAACGATTCTCCCAGATTCACGGTTTGTAAAGTGATATTGCTTCAAGTTTCAATAAAGATGTGTTGCAGTAACTCTTGTATGCTTTGCTTTTGATGTGTTTTCCAAAGTCTATTAAGCCACACATAATGCTATTGTTAATTCGTTTTGCCAGTGTTTCTGATGCAATGAATTCCTAACTATAGTCATACTAAGGACTCAGTTTTTATTGCATCTATGTAGTTTCTTGAATGAAAACCCTATATACACACAGtgggtaaaataagtattgagcaTTTCATTCTTTGTCTCAggaaaatatatttgtaatggtGCTGCTGACTTGGAATTTTCACCAGAACTCAGggacaaccaaagaaatccaaacATGCAAGGAAAACGAAACTAACTAGTTTAGAAATTGAGTTGAGTAAACAAATGAAGTGACACAGGGGaaagcattgaacacatgaagaacaggaggtgtaaaaaggcatggaaagcccaaACAGCAGCTGAAATTCAGCAGTGCTCCCCCTACAGCAGTGTAAAGCAATGTTTGCTCCTTTAATCtaacatttcagcaagaaaatgatcccaaacacagctTAGAAACTATTAACtggtttcagaaaagaaaatgaagcctCTAGAATGGTCCAGCCAATCGTGTGACTTAAATTCAACAGAGATTGAGAACTAAAGTTCagagttatataaatatataaatatttcctaaattatgtttaacagagcaaggaaaatttcacagcatgtctgataatatttttcttctaaagaaagtcttattcgttttatttcgactagaacaggggtcagcaacccgcggctctagagccgcatgcggctctttagcgctgctcttgtggctccctggagctttttcaaaaatgtttgacaatgcaaaaagatgggggaggttaatatattt
>TCONS_00026681
CTCAGTTGTCGGTGAGGCCGGCGGGGCGGATCCCATAATAAATTggaagagaaaataaaagcaacacAATCAAAGCTTCGGCTTATTTGCCTCCAAAAAGGATTTATATTCTCCCTTGTGGACATATTGCGCATAAAGATGCCCTCGGCAACAAATGGCACCAGGACTTTGAAGTCTGCCAGCCCAGACTTGGGATCTGCTCCCGGAGCAATGAACCAAATCACAGCCAGCAACCAGCTGACTGGAACCCAGTCAGAGGCAATGAAGCAGGTGATGGTGGTTCTTGAGAAGAAAGTGCGCAATATGGAAAAGAAAAAGAGCAAGCTTGATGACTATCAGGCCAGAAGCAGTAAAGGGGAACGTCTCAACCAGGACCAGCTGGAAGCCCTGTCGAAGTACCAGGAAGTAATCCATAACCTCGAGTTTACACGGGAGCTGCAGAAGAGCTTTTTGGCATTGGGTCAAGAAATCCAGAAAACTGTTAAGAAAGCGGCACGTCGAGAGCAGCTCCAGCGTGAAGAGAGTGAGCAGAAAAGGTTGAAGCGGGTTCTGGAGCTGCAGTTCGCCCTTGACCGACTAGGGGATGAAAGTGTGCGGCAGGAGCTGCTGCAAGGGGATGGGGAAACTTCACTACTCACTGAGAGTGACCTTACTTCCTTGGATGAGTTTTACAAGCTTGTGGGGCCTGAACGTGACCAAAACATCAGGTTGACTGACCAGTATCAAGAAGCATCGCAACACTTATGGGAACTTTTGGAGGGGAAGGACAAGCCTGTCGCTGGAACAACATATAAAGCTCTGAATGAGACATTGGAGCGGGTTTTGCAGAGCGGCTACTTTGACCGAGTGCAGGCTCATCAGAATGGAGTTTGTGTGGAGGAAGAGGAGGTGGAGGAGCAGGCGGCTCCAGTGGAAGCACCTGAACCAGAGGAACAGCCTCATGACACGGCAGAGGGTGAGATAACGGAAGAGTATCCAGAACCCATTCCAATTGAGACAACAGAGttTGTAAATAGGCAGTTTGTTTCGGAGAGCACGTATAGTACTGGTGAAAAGGAGCAAAGAGAAGACTGGAGCGTGGAACCTGAGGTGGTGAACTCAATACTGCAGCCGGTTCAGGCTGCCCCCATTCCTGTCGTCCCAGAACCTCATCCACTGCCCACAGTAACTCCAACACCCCCCTCAGACCCTGTGTGCAGACAGCAGGTGGTTCAGGACCTCATGGCACAGATGCAGGGACCATACAACTTTATGCAGGACTCCATGCTTGATTTTGATGGCCAGTCTCTTGATCCGGCTATTGTATCAGCACAACCTATGAAGCCAGTCAGTATGGAGATGCCACCAATGGTGTGTCAACCAGCTCACCCGGAGACTCATCTAGCACAGCCTCCAGCTGTTGGCGTTCAGCCAGAACCCACGCAAATACCTATGGTTTCTCCTTCACCAGAAACCTTCTCCACACCGCCACCGATGTATCAGTCCCCTCACACAGCTGATCCCAGACCACAGACAGGCTCGATTGACCCAATTCAGGCCTCCATGCCCTTGACAGAACAAACTCCTTCATCTGCAACGCTTCCTCCTGCCTCCCAAACCCAGGTGATCCCAAAACCCTTGCACAGCAGCGGCATCAATGTCAACGCAGCCCCATTCCAGTCCATGCAAACGGTGTTCAATCTGAATGCTCCTGTCCCACCAGCTAATGATACAGACTCCATAAAGCAGGCCAGCCAATATCAGAATAGCTACAGTCAGGGCTTTAATAGCCAGACACAGCTTCCTGTGGAGCAAACAGACCTGCCGCCAGAGCAGCTCCAGGCTGTAGTTGGTGCCTTCCATTCTCAAGATCAGTCTCTCCAGAACTCAGCTGCTCATCAGGTCATGTCTCAGCAGCAGGCAGGTGTTCAGGGCAATGGCTTCGGTCGCCAGGCTCAGTCCTTCTACAACAGCAGAGGCATGTCTCGTGGCGGCCCCCGCAACTCACGCGGCATCATTAACGGCTACAGAGGACCATCCAATGGCTTCAGAGgtGGTTATGAAGGTTATCGGCCACCATTCTCCAACTCTGCCAACCCTGGATATGGACAAACACAGTTCAGTACACCGCGTGACTATTCTGGCAGCAACTATCAGCGGGACGGTTACCAGCCGAACTACAAGCGTGGCTCTGGCCAAGGGACTCGCGGGGTCTCTCGAGGAAGCGCTCCAGCCATGCGCTCTTAAGCCTTGTCAACCTTTCATCTGGACCACAATGAACATTCGGATACTCAAGTGCAAATGTCCTGGCTCTCTTTCCCCCTCTCTTCGCCATGGAAACCATCAAGCAAATATCAATTTGACATGTTAAAATTGAGAAGTTCAAGCTGAAAACTGTGTCAATTTTAAAGTTTCCCTGTGTTTCTAACAGATATACCTGTGAACTTGAAagacttaatttatttttgttggttttttttGTATGAAATAAAACCTAAACCTGCTACAGCTGGTCCAAAAAAATGGGAGTTTTGTTTCTGCCCCTCTGTTTTTGTTCACACCAATTTGTTCTGGTTTTAAAAATCGCTTCTTTTGGTACATTTTAACGATTCTCCCAGATTCACGGTTTGTAAAGTGATATTGCTTCAAGTTTCAATAAAGATGTGTTGCAGTAA
>TCONS_00026682
AGCACAACCTATGAAGCCAGTCAGTATGGAGATGCCACCAATGGTGTGTCAACCAGGTATGTTTCTATTTGCACCACATGGCCCTGCAATTTGCATATTAGGTTGTTGTGTTTGTGCTTGTTTCTAATCAACCGAAGCTTGTTGGCCTTTTGATTTCTAAACTTGCAGCTCACCCGGAGACTCATCTAGCACAGCCTCCAGCTGTTGGCGTTCAGCCAGAACCCACGCAAATACCTATGGTTTCTCCTTCACCAGAAACCTTCTCCACACCGCCACCGATGTATCAGTCCCCTCACACAGCTGATCCCAGACCACAGACAGGCTCGATTGACCCAATTCAGGCCTCCATGCCCTTGACAGAACAAACTCCTTCATCTGCAACGCTTCCTCCTGCCTCCCAAACCCAGGTGATCCCAAAACCCTTGCACAGCAGCGGCATCAATGTCAACGCAGCCCCATTCCAGTCCATGCAAACGGTAACAAACCTgaaagctgtttttaaaaaaaatgaaacctgTCAAATCAGGATCGCTCCTTAATGTTGTGATTAATCTAATATTGCTACAGATTTGCAGAAAAGTCTCATCGGCTgctaaaactataaaatattaattacagggGATTTTGCTGAGGATCAAGTGGTATAGAGAACTACGAAACTTTACAAAGAGATCTATAAGATATAATTGAATTATAGAGGGTTTGCATATCCATTTCATTCTGTAACTCTTTATCATCTTGTATTAAATGTTAACTTTTATCCTCAATCTGTTTTTCCTGAAAGGTGTTCAATCTGAATGCTCCTGTCCCACCAGCTAATGATACAGACTCCATAAAGCAGGCCAGCCAATATCAGAATAGCTACAGTCAGGGCTTTAATAGCCAGACACAGCTTCCTGTGG
>TCONS_00026683
cctgctctagggggCAAAAGCTGTTTAAATATAATCAAAAGAagaagttaaaaaaagaaataaattccGATTTATGTTTATCCGGAATGGTAGATATTTCAAGTGCATTTAATTTACTGAATTTACTGCCATCTTCTGGCGATTATTTGATTTACATTCAATGTGTCTTGTTCTGCTGATGTAATGTCCGCTGgttgttttatatcttttagaTATGCCCTCGGCAACAAATGGCACCAGGACTTTGAAGTCTGCCAGCCCAGACTTGGGATCTGCTCCCGGAGCAATGAACCAAATCACAGCCAGCAACCAGCTGACTGGAACCCAGTCAGAGGCAATGAAGCAGGTGATGGTGGTTCTTGAGAAGAAAGTGCGCAATATGGAAAAGAAAAAGAGCAAGCTTGATGACTATCAGGCCAGAAGCAGTAAAGGGGAACGTCTCAACCAGGACCAGCTGGAAGCCCTGTCGAAGTACCAGGAAGTAATCCATAACCTCGAGTTTACACGGGAGCTGCAGAAGAGCTTTTTGGCATTGGGTCAAGAAATCCAGAAAACTGTTAAGAAAGCGGCACGTCGAGAGCAGCTCCAGCGTGAA
>TCONS_00026684
AATGCGAACGTTATACCAGGTTTCTTAATGTCAGGACAGTTTCTAATGAGCGGACAATGGGTTGCTGTGACagcgtgtaaagattttgcaaTGTAGTTTTATGTTACTATACAAATGAGTTTGACTTATAAATTTATACGAGGCAAATGATGGAGTGTTCTCTCCCAGCATATTTCACTATTGTAAAACTGCAAGATTGAGTGTGATGTACGATCGAAAATGAAACCATCGTCGATTCCAGCAACCTACATCACACATGCTTCGACTTTTGATCGTCTTGCAGCCATCCAAATTTTCTATTTCAGCACTCACAATTGGTTTGTTAATCAAACCTGCCCTTTATCCCTTTTTAGATGCCCTCGGCAACAAATGGCACCAGGACTTTGAAGTCTGCCAGCCCAGACTTGGGATCTGCTCCCGGAGCAATGAACCAAATCACAGCCAGCAACCAGCTGACTGGAACCCAGTCAGAGGCAATGAAGCAGGTGATGGTGGTTCTTGAGAAGAAAGTGCGCAATATGGAAAAGAAAAAGAGCAAGCTTGATGACTATCAGGCCAGAAGCAGTAAAGGGGAACGTCTCAACCAGGACCAGCTGGAAGCCCTGTCGAAGTACC

Function

symbol description
caprin1b Predicted to enable RNA binding activity. Predicted to act upstream of or within cell differentiation and negative regulation of translation. Predicted to be located in cytoplasm. Orthologous to human CAPRIN1 (cell cycle associated protein 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2020 Predicted to enable RNA binding activity. Predicted to act upstream of or within cell differentiation and negative regulation of translation. Predicted to be located in cytoplasm. Orthologous to human CAPRIN1 (cell cycle associated protein 1).

Ensembl:

ensembl_id ENSDARG00000054272

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026680 False 3373 mRNA 0.47 17 38246940 38270077
TCONS_00026681 False 2654 mRNA 0.50 18 38247797 38270596
TCONS_00026682 False 902 lncRNA 0.44 3 38256189 38258669
TCONS_00026683 False 595 mRNA 0.44 5 38267003 38271298
TCONS_00026684 True 615 mRNA 0.44 3 38267251 38270430

Neighbor

gene id symbol gene type direction distance location
XLOC_013553 si:dkey-10o6.2 coding downstream 1878 38209055 ~ 38245062 (-)
XLOC_013552 luzp2 coding downstream 158841 37836960 ~ 38088099 (-)
XLOC_013551 NA coding downstream 695806 37541715 ~ 37551134 (-)
XLOC_013550 AL627088.1 coding downstream 831495 37409823 ~ 37415445 (-)
XLOC_013549 cep126 coding downstream 839705 37380125 ~ 37407235 (-)
XLOC_013555 NA coding upstream 18783 38290081 ~ 38297955 (-)
XLOC_013556 NA coding upstream 105380 38376678 ~ 38378205 (-)
XLOC_013557 NA coding upstream 488036 38759334 ~ 38768498 (-)
XLOC_013558 BX936456.1 coding upstream 587821 38859119 ~ 38865170 (-)
XLOC_013559 NA coding upstream 598105 38869403 ~ 38870587 (-)
XLOC_013384 BX323829.1 misc downstream 18704709 19542102 ~ 19542231 (-)
XLOC_013544 NA non-coding downstream 1327953 36902021 ~ 36918987 (-)
XLOC_013543 NA non-coding downstream 1359471 36849149 ~ 36887469 (-)
XLOC_013542 NA non-coding downstream 1513038 36714639 ~ 36733902 (-)

Expression


Co-expression Network