CI01000340_05321995_05329778 (ATG4C)


Basic Information

Item Value
gene id CI01000340_05321995_05329778
gene name ATG4C
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5320753 ~ 5330215 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_05321995_05329778.mRNA
ACTTCCTCAAAATGTAAACAGAAGTGAGTAACGTTAGTTGTACAGAGGGTTTTTCAGTATAACAAGACATGTGAGCAGGTATGTTTTAAAGTATATCTTTATATATTTAATCATTTATTTTACAATCCGTTCGCCGCTTGTTTGGGTTAAAGTTTATTGTAGACAACTTTGTAACGTTTTGAAAAGTGCACGCTAACTGATTAATTAGCATGCTAGCATGTATTCTTGTGCTGCATTTGTGTTAATATAGTCGTATTCTGGTGATTCTTTCCTATGCAACGTTATGACTTTCTTCCGCGTGTGATGGAAGTCTCATCTGTGCGAGTAAATAAGTTAAATGGCATCTTTCCATAACGATATAACTTGTTTTGGTCATACTGAAAACTTAGAAACTCCATCGTATGTGCTGTAATGGGTTCTGCTCCGTGGCTAATAAAATGGACAATAAAGGGACCGACGAGGTGGAGAAACTGAAGTCCAAGTTTATATCAGCATGGCACAATGTGAAGTACAGTTGGGCTCTTAAATCAAAAACTGCCTTCAGCCGTAATTCTCCTGTTTTCTTGTTGGGGAAATGCTACCACTTCAAGGCTGTGGATGATGAAAGCCCTACTGAGAGTTGTACTGCTGAGGCATTAGGTGATGTTGTCACAGGCAATGTTGATGGATTTCGAAGGGACTTCGCCTCACGAGTTTGGATGACCTATCGAGAAGATTTTCCAGCCCTTCCAGGCTCCACCCTCACTTCAGACTGTGGGTGGGGTTGTACACTCCGGGCAGGGCAGATGATATTGGCCCAGGCTCTCATGCTTCACATCTTAGGTAGAGACTGGACCTGGTCAGAAGCACTGACCTTGGAGCCCCTGGATACAGAGACATGGACCAGCAGTGCAGCACGGAGACTGGTGGCCACATTAGAGGCCTCCATTCAGGGGGAAAGATCACAGGTCACCCAGCCTGTCTGTCCTGCTCAAGTAGGGGCTGAGGAAGCTGACTCATACCTACAAGAGGCATATCATCGCACCATTGTGTCCTGGTTTGGGGATGGACCGTCAGCCCAGTTGGGCATCCACAGACTAGTGCAGCTAGGAATGACTTCTGGAAAACAGGCAGGAGATTGGTACGGCCCAGCAGTGGTGGCACATATACTCAGAAAAGCTGTTGATGATGCAGCAGATGCATTGCTGAAAGGGATAAGTGTTTATGTAGCACAGGACTGCACCGTGTACAGTGCTGATGTTATTGATAGCCATTCAGGGCGGACAGGCAGCCACTGTGATCCTCAGGGACTCAATACTGGAGCAGCCCCTGATAGTAGAGCTGTCATCATCCTCATTCCTGTGAGATTGGGTGGAGAGAAGATCAACCCAGAATACTTAAGCTTTGTCAAGAGCATATTAAGCTTAGAGTACTGTATCGGCATCATTGGAGGAAAGCCTAAGCAGGCCTACTATTTTGTTGGATTTCAAGATGACAGCTTGATTTACATGGATCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTCCCTCTGCAGTCTTTTCATTGCCCATCACCAAAGAAAATGCCTTTCAGTAAAATGGACCCGAGCTGTACGATTGGATTCTACTCAAAAAACCTCGAACACTATGAAAGAATTGGCAACGAACTGTCAAAGGTTGATAAAAATTCTTTGTTAATTTGCCAGATATTGGAGCCTTCATCGAAAGAGAAGTACCCTGCATTCACCTTTATGACAGGACACGGGAAGGATTATGAACTTTCGATTGCTGGAGAAAAGCGAGAATGGCCTTTCATCAGGAACACAAGAATAGCAGGGACAACATCGGGAGACTTTGTGCTGCTCTGAGGGAACCCTTCAAGCCTCTAACCCAGAGCCAAGTGATACACCACAAATCAGGGCTGGATCAGTCTGTATTTATATACAACACTGTGGGTCTAAACTATAGGACCCTGTGCTACACTGTCCTCATGTCATTTCAGAAAAAGCCATTTATAAAAAAAAAATTTCTGCAAGCAGAGCATTCATTAGCTTCAGAGAGTTGACCATTTAACTGAACCCATACTGATGTCAATACTTCTGTCAGTATGTGCTTGAAAGCAAAGTTTGATGGTGGACATAGTCTGGAGTGTTTCATGAACATAGGCCATCCACATTTGTTTTGATTGCAATTTTATTTAATAGCTAAACCTGTAAACATTTCAGTGTAATATAAATGCAATTGACGTGGTTAATACATGTTTTTTTTTTTTTTTTTTTTTTTCCTCAAATAGAATCATGTTACTTTTCTCACATTTCTTAAAACAATGAATCAAAACACCTAGTCTACTTTTTTGAACGATATACATTTATATGGTGATTTAACTTCACAAATCTTATGTTTTATGTTGACATGTTTTATGTTATGTTAACTGGAAGGATAATGTGCCTTTACAAGTGAGTAGAGAACACTGTTAGATATAACTAAATATAGTGGTAGCTAGATTAAAAAAAAAAAGCCCTGTCTGCTGCCAGCTTTTTTTAGAAATATTAAAGTCATAGTGCATTGATATGCACTGAAACTGTGCTTAATATAAGATTAATTAATGTCAATTAACAACAATACAGTAGTATAATGTCAATATGAAAAACGTAATTTCAGAGCTACAAAGATCTTGTTAGTCTTTGGGAGTTCACTGTGTTATTTAAGCAGTATGAATCAAGGAGTAATTTATTATTAAATGATGCCTTATTTATATAACCTCAAGTTTATTTTCTTGGTGATATATTGTTTTAACAAACTTGTCAACATGTACTGCCATAAATAAA
>TU561021
ATGTGTATATAAATTATACTGAACCAACACACACCAAATATCTATAAGCTAACTCACTAACACCATACAGTTGTAGCTGAATTGTGTATTGTGTGAGAGAAGTACAATTAGGGCGCTTTCACACTTGTTTAGATTACCTAGTTCGAACCTGAGTTCGCCCCCAATGGATTGTGTTCACTTTATATTATTTGGGTCCAAACCGTGGTGTGTTTGTATCAAATCAGCAGCTGTTTACCTTTGTTGCTTGGTAATGACGATGCAGGAGACGGCGACAAAATGCGTTGCTCACTTCACTTATATATTTTGCTTTTTTAAACCTTTGGTTTTGTTTACAAAGCTTCAGCATACAACAGCACTTGCGTATATCTGCCGCGAATGTACTGTAAATGTTCTAAAGAACATGGGAGACCATTTCCTCTGAAGGCGAACAGAAATTATATATACATTCTCTCTGCTCGTCAGTAGGTGAGTGAGTGATCATACATCATTAATAGCGGTTCACTTCTGTGATTTGGTACAATGGCGCCTGTATATCAGCAGTGATATACTCCGTACTGGAGTTAAAATGAACCGTACCCCAGACCACCCTTTTTATGCAGACTCGGTACAGTTCACAGGTGCGCACCCGAGTTTGGAAAACAGTGTTCACATCATCCAAACGAACTAAACTCTGACATCATTCAAGCCCAGATGCGCACCAAAAGTGCTAGTGTGAAAGCACCCTTAGATTCAATAACAGCTGTATTTGTCACACGTGACAGAGAAAGGGACAGACAAAGTACCCGTTTTTGACCTCTGTTATTAATTGTCTGCAGTGTACAGTGCTGATGTTATTGATAGCCATTCAGGGCGGACAGGCAGCCACTGTGATCCTCAGGGACTCAATACTGGAGCAGCCCCTGATAGTAGAGCTGTCATCATCCTCATTCCTGTGAGATTGGGTGGAGAGAAGATCAACCCAGAATACTTAAGCTTTGTCAAGAGCATATTAAGCTTAGAGTACTGTATCGGCATCATTGGAGGAAAGCCTAAGCAGGCCTACTATTTTGTTGGATTTCAAGATGACAGCTTGATTTACATGGATCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTCCCTCTGCAGTCTTTTCATTGCCCATCACCAAAGAAAATGCCTTTCAGTAAAATGGACCCGAGCTGTACGATTGGATTCTACTCAAAAAACCTCGAACACTATGAAAGAATTGGCAACGAACTGTCAAAGATATTGGAGCCTTCATCGAAAGAGAAGTACCCTGCATTCACCTTTATGACAGGACACGGGAAGGATTATGAACTTTCGATTGCTGGAGAAAAGCGAGAATGGCCTTTCATCAGGAACACAAGAATAGCAGGGACAACATCGGGAGACTTTGTGCTGCTCTGAGGGAACCCTTCAAGCCTCTAACCCAGAGCCAAGTGATACACCACAAATCAGGGCTGGATCAGTCTGTATTTATATACAACACTGTGGGTCTAAACTATAGGACCCTGTGCTACACTGTCCTCATGTCATTTCAGAAAAAGCCATTTATAAAAAAAAAATTTCTGCAAGCAGAGCATTCATTAGCTTCAGAGAGTTGACCATTTAACTGAACCCATACTGATGTCAATACTTCTGTCAGTATGTGCTTGAAAGCAAAGTTTGATGGTGGACATAGTCTGGAGTGTTTCATGAACATAGGCCATCCACATTTGTTTTGATTGCAATTTTATTTAATAGCTAAACCTGTAAACATTTCAGTGTAATATAAATGCAATTGACGTGGTTAATACATGTTTTTTTTTTTTTTTTTTTTTTTCCTCAAATAGAATCATGTTACTTTTCTCACATTTCTTAAAACAATGAATCAAAACACCTAGTCTACTTTTTTGAACGATATACATTTATATGGTGATTTAACTTCACAAATCTTATGTTTTATGTTGACATGTTTTATGTTATGTTAACTGGAAGGATAATGTGCCTTTACAAGTGAGTAGAGAACACTGTTAGATATAACTAAATATAGTGGTAGCTAGATTAAAAAAAAAAAGCCCTGTCTGCTGCCAGCTTTTTTTAGAAATATTAAAGTCATAGTGCATTGATATGCACTGAAACTGTGCTTAATATAAGATTAATTAATGTCAATTAACAACAATACAGTAGTATAATGTCAATATGAAAAACGTAATTTCAGAGCTACAAAGATCTTGTTAGTCTTTGGGAGTTCACTGTGTTATTTAAGCAGTATGAATCAAGGAGTAATTTATTATTAAATGATGCCTTATTTATATAACCTCAAGTTTATTTTCTTGGTGATATATTGTTTTAACAAACTTGTCAACATGTACTGCCATAAATAAACTTTCTTTTCAAAGAAACACTTTTGAACCAAAGCAATTGGCATTGAACAGAACTGTAACACTAGCTCTAACACAGTATTGACATTTTGTAGGTGAGTCATATATTTTTTTTTCTTTTATTTATTCAAAACATATTAATTCCACCATTTGTCAGTTTTAAGGGTTTTGTAAATTACTACAATGTATTTCAACACCATACTTTAATTGCCAAAATCATTTTGCACACTGAACATTTCAGTTTTATAATTGTTGATTTCAAAAATGAAAAATAAATCTAATATGG

Function

symbol description
atg4c Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_05321995_05329778.mRNA False 2819 mRNA 0.40 10 5321035 5330215
TU561021 True 2662 TUCP 0.37 5 5320753 5325144

Neighbor

gene id symbol gene type direction distance location
CI01000340_05196551_05197666 FOXD3 coding downstream 122750 5196128 ~ 5198285 (-)
CI01000340_05177681_05192437 ALG6 coding downstream 128598 5177593 ~ 5192437 (-)
CI01000340_05153622_05164991 EFCAB7 coding downstream 155986 5153559 ~ 5165049 (-)
CI01000340_05142661_05150544 PGM1, PGM2 coding downstream 170408 5142458 ~ 5150627 (-)
CI01000340_05011408_05036816 ROR1 coding downstream 284219 5011283 ~ 5036816 (-)
CI01000340_05387790_05394295 USP1 coding upstream 56774 5386989 ~ 5394445 (-)
CI01000340_05450963_05454017 NA coding upstream 120178 5450393 ~ 5455519 (-)
CI01000340_05562762_05566332 NA coding upstream 232401 5562616 ~ 5566332 (-)
CI01000340_05576979_05643605 NA coding upstream 246764 5576979 ~ 5643605 (-)
CI01000340_05717260_05723962 ADCYAP1R1B coding upstream 385988 5716203 ~ 5723962 (-)
G489032 NA non-coding downstream 37810 5282913 ~ 5283225 (-)
G489030 NA non-coding downstream 48750 5272060 ~ 5272285 (-)
G488878 NA non-coding downstream 168347 5151315 ~ 5152688 (-)
G488853 NA non-coding downstream 188286 5090235 ~ 5132749 (-)
G488971 NA non-coding downstream 312042 5008653 ~ 5008993 (-)
G489083 NA non-coding upstream 118662 5448877 ~ 5449105 (-)
G489108 NA non-coding upstream 187967 5518182 ~ 5519118 (-)
G489159 NA non-coding upstream 336303 5666518 ~ 5666834 (-)
G489161 NA non-coding upstream 340316 5670531 ~ 5670749 (-)
G489162 NA non-coding upstream 343310 5673525 ~ 5673873 (-)
CI01000340_04598932_04627160 NA other downstream 661974 4598714 ~ 4627447 (-)
G488862 NA other downstream 724774 4507196 ~ 4518120 (-)
G488782 NA other downstream 1314587 4005805 ~ 4006448 (-)
G487884 NA other downstream 3418763 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 4529626 786551 ~ 791409 (-)
CI01000340_06095704_06194498 MAST2 other upstream 853075 6095704 ~ 6194501 (-)
G489511 NA other upstream 990242 6320457 ~ 6327372 (-)
G491712 NA other upstream 3468986 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 4691677 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 5026969 10356758 ~ 10359856 (-)

Expression


Co-expression Network