XLOC_013555


Basic Information

Item Value
gene id XLOC_013555
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 38290081 ~ 38297955 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027383
tgcaggaaggtagatctccaggaacatgattgagcacccctgatctacacgAACGGCACATTTGACAGaatttcacattatttattttgttatcttaAAGTCTTCCAAGCATCTATGTTCAATGCGTGTACAGTTAATTGGTTTTCCTTAAGCTCAAATTGGAAGACCATTCCAGTTGTAGTCTTTAATTTGCCATGAATTTGTGAGCTCCGCTAAGACCTTTCGATAGCATATTCATACTCGTGattatgtttaagaaaccagttttTGGCGATGTCCTACTGGATCACAATGGCTATGAATTCACGGACCAGCATCAAAAGCTTTCTGCCGAGTTTGTAGTAAAGCCTGCGTCCCACCTCCCCTAAGCGGCAGCCGCAGAGGTCACAGCTCAGACAGTCCTCGTGCCAGTACTGCTCGATGGCCTTCAGAAAGAAGCGGTCTCCGATGCTCTGCTGACACCCGCCACAGGTCAGCAGTGACGGCGGCATCTGGAGCACCTCATCCACCGGCTCCCTGCAGATCAGCGTGTCCATTTAAACATGTCATACACCATTATAAACACCAGATGTCACTGGTGCACTCAtatgaaatgtaatttaaaaatgtgtcGGTTATGTGTGTTTTATAGGCTACAGACAAATACAGGCAAACATGTGCTATTTTTGTAGATGTAGACTACATTGTtacttttgttttataaacaaccGCTTGTGCTGTAGCTGCTGATGCGTGAACCCAAGAGAGAAAAGTGAAGTATGCAAATGAGATGCTATGGGTCACTGCACTCCTGAATTAGATCATGTCACACACTGTTTAACGTTTGTGAACAAAATTCATACAACAAAAGAAAATCTggggtattttatttttttaaaactgttatgtaTAAGCAAATGCAGAGAGATAGTTTGATTTAATGTGAACATTTTTAGGTGGATTTTGTCTTAAAGCTTCATTAAGGAAGCATGTAAAATATCTCATGAAATATAGTGCCAGATTTGGAGCATATAATATGTAAAGGATCAAGGCACTCATCCATACAGCTGCTCTTAATAAACAATGCCAAAGATTTGATCATTATCAAAATGTCCCCAAAGTGGCCCCATTCTCAGATTATTACATTTACTATATAAAAGAttcaatacaatttaaaataaagattacaA

Function

GO:

id name namespace
GO:0016458 gene silencing biological_process
GO:0060968 regulation of gene silencing biological_process
GO:0040029 regulation of gene expression, epigenetic biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027383 True 1169 lncRNA 0.39 2 38290081 38297955

Neighbor

gene id symbol gene type direction distance location
XLOC_013554 caprin1b coding downstream 18783 38246940 ~ 38271298 (-)
XLOC_013553 si:dkey-10o6.2 coding downstream 45019 38209055 ~ 38245062 (-)
XLOC_013552 luzp2 coding downstream 201982 37836960 ~ 38088099 (-)
XLOC_013551 NA coding downstream 738947 37541715 ~ 37551134 (-)
XLOC_013550 AL627088.1 coding downstream 874636 37409823 ~ 37415445 (-)
XLOC_013556 NA coding upstream 78723 38376678 ~ 38378205 (-)
XLOC_013557 NA coding upstream 461379 38759334 ~ 38768498 (-)
XLOC_013558 BX936456.1 coding upstream 561164 38859119 ~ 38865170 (-)
XLOC_013559 NA coding upstream 571448 38869403 ~ 38870587 (-)
XLOC_013560 mapk6 coding upstream 872172 39170127 ~ 39288894 (-)
XLOC_013384 BX323829.1 misc downstream 18747850 19542102 ~ 19542231 (-)
XLOC_013544 NA non-coding downstream 1371094 36902021 ~ 36918987 (-)
XLOC_013543 NA non-coding downstream 1402612 36849149 ~ 36887469 (-)
XLOC_013542 NA non-coding downstream 1556179 36714639 ~ 36733902 (-)
XLOC_013562 NA non-coding upstream 1084771 39382726 ~ 39389542 (-)

Expression


Co-expression Network