CI01000340_05433329_05446428 (KANK4)


Basic Information

Item Value
gene id CI01000340_05433329_05446428
gene name KANK4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5433329 ~ 5446781 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_05433329_05446428.mRNA
GTTTCCAGTGTTTACAACAGATTCCACTCATGATATTGCAAAAACAGAAATAATGGACAAGAAAAATGCAAATGGCTTTCCTTCCAAAGCCTCTGAGAGTGGAGTACAGAGGAAACAGCTACCATATTCTGTAGAGACCCCCTATGGGTTTCACCTGGATCTGGACTTCCTAAAGTATGTAGATGACATAGAGAAAGGGAACACAATCAAGAGGGTGCACATTCAACGCAAGAACAGGGGCCCAAAGTACAGCACACTGCCACGCAACTTCAGCCTTCCTGGGCATGGCGCTCGACCTCTAGCCAAAGATACATGGGCTAATACTTCCACTTTAGGGTCCAAACCCAAGTCACGTGTTACTGAAGTCCAGCAGCTTTTTGAGTTCCGAGCCAGTGATGCCACTGGTGGTAGCAGAAGCACCAGTGGGAGCTCCCCTGCCAGCCAGTCAAAGATGCCTGGGAGTGGTTACCTCCCCTCGCCAAAGGCTGCCGAAGAGTCTCCAGTACAGACTTCATCTCAGAATGAACAGTCCATGAGCCTTAATGTTAGGCCTCACCTGTTAAGAGCCTCCAGCATGCCTGTTAATGTCCCACGCAGGAAAGGTTCAGACTCAACTGATGAGCAGAGTTCCCAGTCACAGAATGGCTCAGCTGAGAGGCTTTTTCGACCAGCGGATGGAGGCGACAGGAGAGGCAGTGTTCCCCAGGACAGGGCCAGCTTGCATCAACAGATTACAGCTGCACTGAAAAGGGTGCGTGAATTAGAAGAGCAAGTCAGGACCATACCTGAGTTGAGGGCTCAAATATGCTCTCTTAGAACGGAGAGAGAACAACTGCTTGAAAGAATTCAGCAACAGCAGTCTGAACAAAAGAGGCCTTTGCAGTTAAACGAGAGTGAGGATACTCAAGACAGTGTTGTTCCTCCAGTTATAAGTGAGAAGAAAGATATTTGTTCCCCTTCCACAGTTACTGCAGATGATCATGAAATGGTTCAAGCAATACAGTCTGACAAAACCACAGAACAACAGTCGGAGGAACAAAATCCTGTGGTGCAGGTTATTGTAGAGCAGGAGTCTGAAAAAAATGAACCAGTAACCGATACAGAGTCAGAGAAGGAACAAGTGCCAGCTCCAGTGTCTGTCCCAGTGATACGCATAGACAAAGCAGAAACTCCAACTGATCCAGATGAAGCAGAGGGATTTTTGCAGGAGTCTACACTTCAAGAAGAAGCATCAAAGAGTCTTTCAGAGCAAGTAGAAAAGCAGGAGATATTATCAGAGACTTTGTTAGAAGATAAAAAGTTGACGCTGGATTTAGAGGAAACAGGTGCTACATCCGAGTGTACATCCGCTCGAGAAGATACTGCGATTTTTGAGGGACCAAGTCTAATTGTAATTGAGGAAAATACAATAGTACAACCTGCTGAACAGAAACTTCTCACTAACCTGGAGCTGGAAGCAAAACTGAAAACTTTGGAAGAGAGTCTAAGCAAGGCCAGTTGTGAATTGGAAAAGACAAATGCCTTACTGAGGGAACAGGTGGACAAGAATAGACAAAAAGATGAGAGAATACAGGAACTGACTGACCAAGTGAAGGAGCAGAAACTTCAAGGTCCTATCGAGACAGAGCCACTTTCTTTACCAGTTGTCACATGTGATGTATCAGTGAGTACAGACAGCAAAAGTGTCCTGGAGAGAGGAGTCTCAACAGAACCACAACCAGCTGAGGGTCCCAAAGAAATAGATTCTAAATGCTCAAGCACTCAGACAACTATAGTAGAAGCTCGAGACATTGAGGTCTTAGCACAAGTTACTACAGCAGAGAAAATTGTAGGGGTAGAGATTGTCATGTGTGACCGGGCAATGGAGACTGAGGTACAGGATAATCTAGAAGATAACAGTAGACAGGAAGTCTCTGAAATGCTAGCGAAAACAGACTCTGTAAAAGACAAAGAACAAGAGGGTGATATCAAAGATAGTGTGTCAAGCCAGATTGTAGATACCAAAGTCAGTGAAAATGTTGTTGCAGAGAGTGACACTGAGGAATATGTCATGGTAGAAAGTGCCATGGTTGAGACTATGGCCAGTGAAAATGAAATCCCTAAGCCCACAGTCCAAGAGATAGAATCTGCAGAGAGTAAGGGGGTTGAAAGCACAACGGACAAAGCAAGAGAAAGAAGTTCAGGTTTGCAAACACAGCAGGAACCAAGAGAAATACAAGAACAGGATCCCCACCTTCAGTCTCCAAGGGCATCTGAAGCCACAGCTTCTCCTGCTGCAATCGGTCAGGTTGTTAATCGTATACAGGGGCTTCTTAATGAGCAGTGGGCCAGTTTGGGAAGTGGGGGCCAAGACACAAAAGGAGAGAGCTCCCAGAAACCTCATTCTTCCAAAATAAGCTCTATTCAAAGCCACCTGAGAGGGTCCCTTAGTGCCCTGTCTGCCTTTTACTCACCTGTTCAGAAAGGAGGGGCTGCACGACAATCAGGCCTCAAATCCATCATGAAGAAGAATGACTGTCCTGACAAGCAGGGCAATGGGGGAGCGAAGAAGAACTTGAAGTTTGTTGGCGTAAATGGAGGCTATGAGACCACGTCCAGTGAGGACTCCAGTGGGGAGGAGGATCAGGACGAGGTTGAGGAGGTGGATAGTTCGGAGCCTGAGGTGGAGCAGGGAGAGGAGAGTGGAACGGCCCAGGAGGAGGCTGCTGCTACTGGGGAGCAAGGTGATGGGGTTCAGGCAGAGGTGGCAGAGGGCTCTAAGGAGCCTGATGCTGGCCAGGCCGCCATGAGTCCCCAGGAGGAGCAGCCTGTCAGTGAGTTAGTTGATAAGAACTTCATGGCTGCTTGTCATTTCCTGAAGGATCGCATGGCTGAGGTTGCTGCCCCAAATAAAGACATGAGGCAGGTTCTGATGGTGTTATATCAGGAGTGGTTCCGTGTGTCCAGTCAGAAGGACTCACAGGCTGATACAGTCACACTCTACCTGAGAGAGGTGGGCTTCCACACTCCCACTCTGCTGCGCTATATAGTGAACCTGGCTGATGGTAATGGCAACATGGCACTGCACTACAGTGTGTCCCATTCCAACTTCTCTGTGGTCAAGCTGTTACTAGACACAGGACTGTGTGAGGTGGATCACCAAAACAAGGCCGGCTACACCGCTATAATGTTGGCAGCTCTTACCGCGGCAGAGAGCCCTGAGGACATGGAGGTGGCTCAGCAGCTACTGAGAATGGGCAAAATCAATGCACGAGCCAGCCAGTCAGGGCAAACAGCACTGATGCTTGCAGTTAGTCATGGGCGGACAATGATGGTTCAGGTTCTTCTGGACTGTGGCGCTGATGTGAACATACAGGACCGGGATGGCTCCACTGCTCTGATGTGTGCCTGTGAGCACGGCCATAGTGAGATAGCCAAAATACTGCTGGAGAGACCAGAGTGTGACATATCACTCACAGATAAGGATGGACACACAGCTTTGTCAGTAGCCATGAAGGCGTCCCACCCTGAGATTGTTGATCTTCTGAAAGCTCGTGCTGATCCAGCCACTGTTACAGATCCTACAGCTCCACTCTGAGTCCAATGGCCTTGTCTTCATGTCCAACTGGCTCTGCCAGAATCATTTTTCTACTGCCTCAACCTGACTCGCTGGCCAGGCCAACAGTCAACAATAGAGAGACAGCACTTGCCAGTAATTAGCAGATTCTCTGTTTGAGAAACGGCCAATGAGAAATGTACTTCCGTACGCCAATCAAAGATGCCATGGAGGGTGGGCTTCCCTAAACTCCCCAGAAGGTCCCCATTTGTCCTGAAGCACAGCTACTGTAGCTATTTAGCAGGCATGGTACATTGTTACATGTTTTAGCCTTCTATTTTCAGGTAATGTGACTATATTTTTGTTAGGCGATGAAAAGTACTCTATGAATGTTA

Function

symbol description
kank4 Predicted to be involved in negative regulation of actin filament polymerization. Predicted to be active in cytoplasm and cytoskeleton. Is expressed in several structures, including cardiovascular system; head; lateral plate mesoderm; median fin; and nervous system. Orthologous to human KANK4 (KN motif and ankyrin repeat domains 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_05433329_05446428.mRNA True 3930 mRNA 0.48 9 5433329 5446781

Neighbor

gene id symbol gene type direction distance location
CI01000340_05338225_05385755 DOCK7 coding upstream 47574 5338225 ~ 5385755 (+)
CI01000340_05165855_05175759 NA coding upstream 256957 5165246 ~ 5176372 (+)
CI01000340_05105114_05112407 NA coding upstream 320616 5104359 ~ 5112713 (+)
CI01000340_04809014_04832590 JAK1 coding upstream 600739 4809014 ~ 4832590 (+)
CI01000340_04660938_04668996 NA coding upstream 764007 4659584 ~ 4669322 (+)
CI01000340_05646434_05651598 NA coding downstream 198856 5645637 ~ 5652345 (+)
CI01000340_05697468_05705929 GHRHRB coding downstream 250536 5697317 ~ 5706900 (+)
CI01000340_05781697_05792066 POMGNT1, MGC81332, POMGNT1.S coding downstream 334071 5780852 ~ 5792678 (+)
CI01000340_05875022_05877021 NA coding downstream 427806 5874587 ~ 5877298 (+)
CI01000340_05942559_05948192 NA coding downstream 495195 5941976 ~ 5949268 (+)
G487658 NA non-coding upstream 208629 5224326 ~ 5224700 (+)
G487638 NA non-coding upstream 280365 5152490 ~ 5152964 (+)
G487602 NA non-coding upstream 282713 5142443 ~ 5150616 (+)
G487581 NA non-coding upstream 343656 5089469 ~ 5089673 (+)
G487580 NA non-coding upstream 350050 5083013 ~ 5083279 (+)
G487709 NA non-coding downstream 97015 5543796 ~ 5573983 (+)
G487724 NA non-coding downstream 141665 5588446 ~ 5606729 (+)
G487775 NA non-coding downstream 209233 5656014 ~ 5670162 (+)
G487799 NA non-coding downstream 292736 5739517 ~ 5748252 (+)
G487808 NA non-coding downstream 309603 5756384 ~ 5756606 (+)
CI01000340_04399692_04401164 NA other upstream 1031833 4399419 ~ 4401496 (+)
G487133 NA other upstream 1450784 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 2501529 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 5120084 312212 ~ 313534 (+)
G489634 NA other downstream 1247440 6694221 ~ 6700788 (+)
G490645 NA other downstream 3592031 9038812 ~ 9043101 (+)
G490826 NA other downstream 3678403 9125184 ~ 9131397 (+)
G490839 NA other downstream 3788192 9234973 ~ 9237559 (+)
G490896 NA other downstream 4384692 9831473 ~ 9845052 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location