CI01000340_05450963_05454017


Basic Information

Item Value
gene id CI01000340_05450963_05454017
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5450393 ~ 5455519 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_05450963_05454017.mRNA
ATTCCTTATACAATAAAAATGTAAATATGAGGAACAAAATTACAATGGGTCTGAATGTTTTGTGATGTTTGGTATTTCACCAAAGACAGGGCACCAATAGACTTGATATTCTGATACAAAGATCTGTTTTCATGCAGTATGAAAAAAAAGGGAAACAGCTACAGTAAATAATTATTTTGTCATTGAGATAAACATTTTTTATACTGCAGTATGTTTGTATACTGCATAGATGACATCGCCACATCATCGTTGTTTATGAAATTTAAACCACTTTTTCAAATCATAAATTTTTTGGTCACACTTTAGATTAGAGTCCAATTCTCACTATCAACTAACTATTAACTGCAACATTTGCCTCAATAAACTCCTAATTACTGCTTATTATTAGTTAGTGAGGTATAGTTGTTAAGTTTAGGTATTAGGTAGGAATTGGGTAGGATTAAGGGATGTACAATATGGTCATGCAGAATAAGGCATTAATATGTACTTTATAAGAACTAATAAACAGCCAATATCCAAGTAATATGCATACTAATAAGCAACTAGGTAATTGTGAGACCCTAAACTAAAGTGTTACCTTTTTTTTTTCTTTTTTTTTTTGATGAAATAAATGTTATAAGTAAATGTAAATAAGGGTTTAAGTGTTTCAGGCTCTGCAATTAAAAACTCAAAGTGATCTCAACTCCATGTTGATTAAGACTGTGATTATGATGGTACAAAGAAAGGAACAACTTTAACAAACTTAGCCCAGATATCACAAATCAAGCTCCAAAATGACCATTAGAAGATAATTCTGAGTCTTCTGAAGCCACCCAAACAATACAATTTCATTATTTACATACTTTCATGTTGTTCCAAACCTGTATGACTTTTTCCGCTCCATGAAACACAAATACTGAAATGTTGAAGAATATACTGGTGTTTCTTTTCCATGTAATGAATGCAAATGGGAATTTTCACATACTGTGATGACACACTTATAACAACACTACTTTTTTCCCTTTTGAAGTGGAACTCAACACTGCTTCTTGGATTGACGCTATAGGGAACACCATCAGCGTGACCGGTGTCTGAAACGTGTACAAACACGACAATTTCATTGGCCGACGATAGTCTATGATGTCATTACCTTAGCATAAGTGAGTATAAGAGGACGACCGTGGTGAAGGCTATTGTTATGGATAAAGACTCAAACAAGCATTTCAGGAAGTGTGTGCTTCTGTTACTCAAACACACGATCTGTGTGTTGTGTGTTTGGGTGTGGAGCATGCGCATTCAGTTCTCAAGGGAGCTGAATGTGCCCATTGTGAGAAAATTCACAATGATGAACCTCCGTTCACACTTGACCCTATTCTCGAAGGATGTGGGACAAGTGTCTACACCCCAGTGCTCAGGCCCCGATATAGCCGAGGCACAACAGAGTCTGAAGTTGTGGGGCTTGCAGATCAAGCCGGCTGAGGAGTTTGAAAAAGGTATGGCCTCAAGCAATCTGCTGGATCAGGATGTGCTGTTTCTTGAGTCATCTGGTGCCATACAGCCAGGATGAGGCGGATGTGGTTGAGAAGAGCGAAGAAATCATTTGTAGGGAGCCCTCTCAGCCAGCCACTCTCACATTCGAGGAGCTGCTGGATGTGATCAGATCTGGTTTGGGGTGCAAGAGACAGGAAGTCGCTTGTGGCAGATTCGACGAGAGGTTCCTGTCAGGCCATAACCATCCCCCTCCTATGAGCCATCCTTTTCTTCCCGAACTTCACGCAGAAGGTGTAACACCGCCACAGCCTTTTAAACCATCAGCAACCCTGCAGATTGGCGGAATGCTGGTCATGACGTCAAAACATCATGACATCACCAAGATGATTGACAGTTCTCCGGTCCAATAAGATCAACCTAAGAATAACTCGAAAGCAAGATAACAAAAGAGAGAGAAAAAAAAAACAAAAAAAAACATACGTGGAACGGAACACTTTTGCTGTACTAGTTTCTGTTTATACCCAACTGTGACAACTTCCGCTTATTAGAACCCTAGAAATGTGAAAAGGGTCCACTGTTACACTGAACTCCAGATAAAACAACAAACTGTAATTTTTGTACAGTGTAATGTAACTGTTACTTTTAGCCTATATGATACTCGTTTTAAGACATGTAACGTTTTTACAATTGTTGATCATTAATGTTTACAAAATTGCAGATAAAACATTTCAACCCTAACATCAAGCTATACAAAATATAATTAAATACCCTCACCTTCACATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGATAATGCACTCATTCTTATACAGAATCAATACACATATCTATGTATAATAAGATGCAGGTATGGATTATAAACTATAGGTATTTTCAAAACATTCCAGAATACCTGAACAACAATTACATTGAAATTACAGGAAATTAGCAGTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_05450963_05454017.mRNA True 2450 mRNA 0.37 2 5450393 5455519

Neighbor

gene id symbol gene type direction distance location
CI01000340_05387790_05394295 USP1 coding downstream 55948 5386989 ~ 5394445 (-)
CI01000340_05321995_05329778 ATG4C coding downstream 120178 5320753 ~ 5330215 (-)
CI01000340_05196551_05197666 FOXD3 coding downstream 252108 5196128 ~ 5198285 (-)
CI01000340_05177681_05192437 ALG6 coding downstream 257956 5177593 ~ 5192437 (-)
CI01000340_05153622_05164991 EFCAB7 coding downstream 285344 5153559 ~ 5165049 (-)
CI01000340_05562762_05566332 NA coding upstream 107097 5562616 ~ 5566332 (-)
CI01000340_05576979_05643605 NA coding upstream 121460 5576979 ~ 5643605 (-)
CI01000340_05717260_05723962 ADCYAP1R1B coding upstream 260684 5716203 ~ 5723962 (-)
CI01000340_05739446_05740109 NA coding upstream 283462 5738981 ~ 5742133 (-)
CI01000340_05778950_05780358 NA coding upstream 323342 5778861 ~ 5780429 (-)
G489083 NA non-coding downstream 1288 5448877 ~ 5449105 (-)
G489032 NA non-coding downstream 167168 5282913 ~ 5283225 (-)
G489030 NA non-coding downstream 178108 5272060 ~ 5272285 (-)
G488878 NA non-coding downstream 297705 5151315 ~ 5152688 (-)
G488853 NA non-coding downstream 317644 5090235 ~ 5132749 (-)
G489108 NA non-coding upstream 62663 5518182 ~ 5519118 (-)
G489159 NA non-coding upstream 210999 5666518 ~ 5666834 (-)
G489161 NA non-coding upstream 215012 5670531 ~ 5670749 (-)
G489162 NA non-coding upstream 218006 5673525 ~ 5673873 (-)
G489189 NA non-coding upstream 300846 5756365 ~ 5756630 (-)
CI01000340_04598932_04627160 NA other downstream 791332 4598714 ~ 4627447 (-)
G488862 NA other downstream 854132 4507196 ~ 4518120 (-)
G488782 NA other downstream 1443945 4005805 ~ 4006448 (-)
G487884 NA other downstream 3548121 1895801 ~ 1902272 (-)
CI01000340_06095704_06194498 MAST2 other upstream 727771 6095704 ~ 6194501 (-)
G489511 NA other upstream 864938 6320457 ~ 6327372 (-)
G491712 NA other upstream 3343682 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 4566373 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 4901665 10356758 ~ 10359856 (-)

Expression


Co-expression Network