XLOC_013556


Basic Information

Item Value
gene id XLOC_013556
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 38376678 ~ 38378205 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026985
ctgtattttccacaactgcttcaacgccaccttgcggcgattcgactactctgcaccacattttgcctgaggaccctggagcaattctggaggacaatttattagtgtgcctgaagaacatactggatttaacaaactttactctggtaagctgaggcagtgtttcattttacagaatgttttgtggacgagaatagaacaaagtataaagttggctattattattttctctggcttggcgttatttcgcccatttgagaaatatatcatctattaagatgttacctttatttaatttattacattaacactactattactttaaataagactgtttatgactattagccattgttctcgtcatatctttttatttatttacataggaaccggtgttgcagcgggttttggtttaggagggaaccagaggtatgcagacagttttggaggacacttagcacgagacaacggtccggcagagagtgttttcccccagaagaatatgaatgaaagaccatcaaataatccagatatggcacgaGCACAGCaccaggttttgtctgaagaaacaaacagcatttcggaggaacatcttgatcagcacagccttatgcttaaaaaataagcaagaccagtaagcaaccaagaatactgggagcctgcctgtgcaaactggacctcatacaacagtaagtactgtacatctatttgtttctcaatata

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0006364 rRNA processing biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026985 True 723 lncRNA 0.39 3 38376678 38378205

Neighbor

gene id symbol gene type direction distance location
XLOC_013555 NA coding downstream 78723 38290081 ~ 38297955 (-)
XLOC_013554 caprin1b coding downstream 105380 38246940 ~ 38271298 (-)
XLOC_013553 si:dkey-10o6.2 coding downstream 131616 38209055 ~ 38245062 (-)
XLOC_013552 luzp2 coding downstream 288579 37836960 ~ 38088099 (-)
XLOC_013551 NA coding downstream 825544 37541715 ~ 37551134 (-)
XLOC_013557 NA coding upstream 381129 38759334 ~ 38768498 (-)
XLOC_013558 BX936456.1 coding upstream 480914 38859119 ~ 38865170 (-)
XLOC_013559 NA coding upstream 491198 38869403 ~ 38870587 (-)
XLOC_013560 mapk6 coding upstream 791922 39170127 ~ 39288894 (-)
XLOC_013561 leo1 coding upstream 914706 39292911 ~ 39321484 (-)
XLOC_013384 BX323829.1 misc downstream 18834447 19542102 ~ 19542231 (-)
XLOC_013550 AL627088.1 non-coding downstream 961233 37409823 ~ 37415445 (-)
XLOC_013544 NA non-coding downstream 1457691 36902021 ~ 36918987 (-)
XLOC_013543 NA non-coding downstream 1489209 36849149 ~ 36887469 (-)
XLOC_013562 NA non-coding upstream 1004521 39382726 ~ 39389542 (-)
XLOC_013565 BX908722.2 non-coding upstream 1208341 39586546 ~ 39586665 (-)

Expression


Co-expression Network