CI01000340_05942559_05948192


Basic Information

Item Value
gene id CI01000340_05942559_05948192
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5941976 ~ 5949268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_05942559_05948192.mRNA
GCATATAAGTGGCCAGATATATGGGCACACTTCCCAACTGTAACCTTAGCAGAAGGTCATTGCTCAGTGGAAGGACAGTGGAGACAGGAAGAGACAATAGTGCTTATGATACATTATGCACTGTATTTCATTCAGCTGGAGGACATGTCATATACTGAATTTAAAAATTCATTGGGACAAAATATTTATATTTTACTGCATTTAAAGGGATAGTCCACCCAAAAATGAAAATTCTGTGATCATTTACTCACCCTCATGCCATTCCAAACCTGTATGACTTTCTTCTGTAAGAGACAACAGAAGAAATTTTGAAGAATGTTGGTAACTCAACAGTTTCAGTTCCCACTGACTTCCATTTTATGGACAAAATACAATGAACGTCTGTGGGAACCATAAATGTTTGGTTATCATTATTCTTTAAAATATCTTCTTTTGTGTTTAGCAGAAGAAACCAATGCATAAAGGGTTTTGGAATGACATGAGGGTGAGTAAATGATGACTATTTTTATTTTTGGCTGAACTATCCCTTTAATGTTCATTTTTAAATATTTTACTTTTAATTTTTAGTTCATTTTAGCTCATAATGCATAATGTTAATGTATACTTTAATGTAACTTTAAATGGCCCCTGTGGAAAGGGAGATGTTGTAGAGCAGTGCGCTCTGCCTGACCAGACCCCAGCTGTGGTGCTCAGGCTGACGGAGGCTCTAGAGAGACTGGACTGGGAGAATGAGCCACTGTACCGGTCTGGCCAGACCTCCATTGGACCACCGGAATTACTTCAGGCTTTGGAAACAGATACAGCCTTGGAAGTGATCACTAACAATGATGTCATCCCTTAATTGCTCTCTTTTCCTCTCATTCTCTCTCTCTCTCTCTCTCTCTCTCGTTCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTCTCTCGTTCTCTCTCTCACTCACACACACACACAGACACATACTTGTGACCAGACTCCTCCCTTGTTCAGCCTTTTTGGCTCTTAAAGTTTCCTGACAGAGATGTTCTGATCGATTAATTCGCTGAGTTAGGGCCCGTTCACAAAGGATGCGCTCTTGCATCCATCTGCTTTAAATAGTTTTTATACTGTACATGCGCCAGGTGGGTGTTTTTGAATGTTGTGATGCATCTCATAGGGTTTTTTTTAGTGTCTCCTCCCATGAGTGCTGGACCTTTAAGATGCCGTGTCAAGTTAAGAGGTTCAACTTTTTAAATGGTGAATCGGGACACCTGCATTCTGTTTTATTCTATTTTTAAATGCTCAAACCCATCCTGTGTGCATGGATGGATGGATGGATGGATGGACAGACAGGTGGATAGATGGTTGGATAAATGGTTGAATGAATGAATGAATGGATGGATGGATGGACAGGTGGATGGATGGACAGGTGGATGGATGGATGACAGATAGATAGGTGGTTGGATAGTTGAATGGATGGAGGATGTACAGTTTATATGGATAGACAGGTGGATAAATAGTCGAATGAATGAATAAATGAATGAATGAATAGATGGATAAATAGTTGGTTGGATAGTTGGATAGATAGTTGGATGGATGGATGGATGGATGGTTGGATAGATGGATGAATGGATGGAAGAATACATAGATGGATGCATTTCAAAAAATCAAGGAAATGATCCATGTTAGGATCTTTTTAAAACCAAATGCCCTCAATGAACAAGCATGTTATGTAACTGGCAAAACTTTCTTCTTCCGCAGTGTAATGCCACAGTTGTATCATCTCTATTTTTCCATTCTCTCTCATTTCTCCCCTCTTCTGAACTATTCATTTTCATTCGCTCATTTCCGCTCCCTTTTCATGTCCTCCTCGAAGACTTGATTGGATGGGGACACATAATGCACAGTGCCAAACCAGAGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_05942559_05948192.mRNA True 1917 mRNA 0.40 4 5941976 5949268

Neighbor

gene id symbol gene type direction distance location
CI01000340_05875022_05877021 NA coding upstream 64678 5874587 ~ 5877298 (+)
CI01000340_05781697_05792066 POMGNT1, MGC81332, POMGNT1.S coding upstream 149298 5780852 ~ 5792678 (+)
CI01000340_05697468_05705929 GHRHRB coding upstream 235076 5697317 ~ 5706900 (+)
CI01000340_05646434_05651598 NA coding upstream 289631 5645637 ~ 5652345 (+)
CI01000340_05433329_05446428 KANK4 coding upstream 495195 5433329 ~ 5446781 (+)
CI01000340_05967007_05972445 NA coding downstream 17448 5966716 ~ 5972589 (+)
CI01000340_06033435_06039832 PIK3R3B, PIK3R3 coding downstream 82989 6032257 ~ 6039849 (+)
CI01000340_06227847_06235507 GPBP1L1 coding downstream 278579 6227847 ~ 6235903 (+)
CI01000340_06237715_06245533 NA coding downstream 288447 6237715 ~ 6245762 (+)
CI01000340_06264637_06276320 ORC1 coding downstream 315369 6264637 ~ 6276803 (+)
G489228 NA non-coding upstream 34981 5886014 ~ 5906995 (+)
G489235 NA non-coding upstream 111983 5829783 ~ 5829993 (+)
G489237 NA non-coding upstream 112436 5829314 ~ 5829540 (+)
G487814 NA non-coding upstream 171090 5764823 ~ 5770886 (+)
G487812 NA non-coding upstream 179163 5762580 ~ 5762813 (+)
G489230 NA non-coding downstream 48659 5997927 ~ 6000707 (+)
G489229 NA non-coding downstream 51683 6000951 ~ 6010551 (+)
G489271 NA non-coding downstream 124473 6073741 ~ 6073943 (+)
G489274 NA non-coding downstream 127743 6077011 ~ 6077243 (+)
G489281 NA non-coding downstream 137418 6086686 ~ 6087057 (+)
CI01000340_04660938_04668996 NA other upstream 1276791 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 1540480 4399419 ~ 4401496 (+)
G487133 NA other upstream 1959431 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 3010176 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 5628731 312212 ~ 313534 (+)
G489634 NA other downstream 744953 6694221 ~ 6700788 (+)
G490645 NA other downstream 3089544 9038812 ~ 9043101 (+)
G490826 NA other downstream 3175916 9125184 ~ 9131397 (+)
G490839 NA other downstream 3285705 9234973 ~ 9237559 (+)
G490896 NA other downstream 3882205 9831473 ~ 9845052 (+)

Expression


Co-expression Network