CI01000340_06327907_06340628 (AP1M3)


Basic Information

Item Value
gene id CI01000340_06327907_06340628
gene name AP1M3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6327486 ~ 6340644 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_06327907_06340628.mRNA
GTATATAACACAAAGTAAATATTACATGGAATTCACATTATACTAAACGAATGCAGTGTTAGTGGGATTTTTATCCATCTCTACTGTTTAATAAAGTATTGTCTTGTCACCTTAAAGTAGTTGAAGTGACGTCACGCCGCTTCTACATTGTAATCGAAAGACGCGTCAAAACTTGAAAAGTGTAGATCGCTTCGTTAATTATAATGGCAGGGTTCTAGTTTTGACGTGTCGCGTCTCTCACAGTGTACAGCACAGCAACAAGCTCAAGCTGCACAACCGGTTAGACGCCTCCAAACCCGGAAGATGCGTGTACAAGGGATGGGGAAGATCTCTCTTCATTTCGAGTGATTAAACTTCACCAACATTGACGAAACTTCACCACCTGTCAGTTACTACCGGTCATACAACAGCTTTGATAAGGATGGCAGCGTCCGCGATCTTCATCCTGGACTTGAAAGGCAAGGTGCTCATATGCCGGAACTACATGGGCAACATAGACGTCAATGAGATTGACAACTTCATGCCCATAATGATGAAGAGAGAGGAAGATGAAGATTTGTCACCAGTGGTTATTCATGGCTCCACCCACTTCCTCTGGATAAAGCACAGCAACCTGTACTGTATCCTCTATACGCTTGTAAATGTGTTCACTGAATATTTCAAGTCACTGGAAGAAGAGAGTATTCGAGACAATTTTGTGACAGTATATGAGCTAATGGATGAAGTCATGGACTTTGGATTCCCTCAGACCACTGACAGCAAGATCTTACTAGAGTACATCACCCAACAGGGGCATAAGCTGGAGGTGGGAGCACCACGGCCCCCAGCTACAGTAACAAATGCTGTGTCTTGGAGGTCAGAGGGCATCAAATACAGGAAAAATGAAGTCTTCATGGATGTCATTGAGTCTGTTAACCTATTGGTCAGTGCTACAGGCAGTGTTCTACGAAGCGAGATTTTGGGCTGCATCAAACTCAAAGTCGTTCTGTCAGGCATGCCTGAGTTAAGACTTGGACTCAATGACAAAGTTCTCTTCGAGATCACTGGGCGAGAGAAGAGTAAGTCTGTGGAGCTGGAAGATGTGAAATTTCATCAGTGTGTGCGTCTCTCTCGCTTCGAGAACGACCGGACTATCTCTTTCATCCCACCTGATGGAGAATCCGAACTCATGTCTTACAGACTCAACACCACGGTGAAGCCTCTAATATGGATTGAGAGCGTAATAGAGAAGTTCTCTCACAGTCGAGTAGAGATCAAGGTTAAGGCCCGCAGTCAGTTCAAGAGCCGCTCCACTGCCAACAATGTGTCCATCTTAGTTCCTGTTCCAAGTGACGCTGACTCCCCCAAATTTAAGACCACCACAGGCCAGGCTAAATGGGTTCCTGAGAAGAGTGCTGTAGAATGGAACATTAAGTCCTTCCCTGGTGGGAAAGAGTTCATGATGCGAGCTCATTTTGGACTGCCAAGTGTGGAAAGTGGTGAACTTGAGGCCAAGCGACCAATTACAGTAAAGTTTGAGATTCCATATTTCACAGTGTCGGGCATTCAGGTGCGATACTTAAAGATTATCGAGAAGAGCGGATACCAGGCATTACCGTGGGTGCGTTATATTACTCAGAGTGGAGCGAGACAACTACTGCCTTTCACACAGCAGTCAGATGGCTGTACCCTTCCTATTGCTTTTGTCTGAGATCAGATTTTACAAA

Function

symbol description
ap1m3 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in cerebellum; hindbrain; midbrain; midbrain hindbrain boundary; and somite.

NR:

description
AP-1 complex subunit mu-2

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_06327907_06340628.mRNA True 1706 mRNA 0.45 11 6327486 6340644

Neighbor

gene id symbol gene type direction distance location
CI01000340_06326491_06326891 NA coding upstream 341 6326491 ~ 6327145 (+)
CI01000340_06264637_06276320 ORC1 coding upstream 50683 6264637 ~ 6276803 (+)
CI01000340_06237715_06245533 NA coding upstream 81724 6237715 ~ 6245762 (+)
CI01000340_06227847_06235507 GPBP1L1 coding upstream 91583 6227847 ~ 6235903 (+)
CI01000340_06033435_06039832 PIK3R3B, PIK3R3 coding upstream 287637 6032257 ~ 6039849 (+)
CI01000340_06538378_06617710 LRP8 coding downstream 197734 6538378 ~ 6617947 (+)
CI01000340_06656187_06669677 NA coding downstream 315378 6656022 ~ 6671469 (+)
CI01000340_06677894_06691556 IL12RB2 coding downstream 337250 6677894 ~ 6691569 (+)
CI01000340_06702811_06703207 NA coding downstream 362167 6702811 ~ 6703903 (+)
CI01000340_06769655_06778207 UHMK1 coding downstream 429011 6769655 ~ 6778207 (+)
G489379 NA non-coding upstream 42178 6270966 ~ 6285308 (+)
G489333 NA non-coding upstream 152090 6175013 ~ 6175396 (+)
G489331 NA non-coding upstream 155550 6171635 ~ 6171936 (+)
G489330 NA non-coding upstream 156524 6170732 ~ 6170962 (+)
G489329 NA non-coding upstream 156793 6170437 ~ 6170693 (+)
G489651 NA non-coding downstream 147565 6488209 ~ 6525984 (+)
G489634 NA non-coding downstream 353577 6694221 ~ 6700788 (+)
G489668 NA non-coding downstream 449875 6790519 ~ 6790812 (+)
G489640 NA non-coding downstream 450946 6791590 ~ 6799334 (+)
CI01000340_04660938_04668996 NA other upstream 1662301 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 1925990 4399419 ~ 4401496 (+)
G487133 NA other upstream 2344941 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 3395686 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 6014241 312212 ~ 313534 (+)
G490645 NA other downstream 2698168 9038812 ~ 9043101 (+)
G490826 NA other downstream 2784540 9125184 ~ 9131397 (+)
G490839 NA other downstream 2894329 9234973 ~ 9237559 (+)
G490896 NA other downstream 3490829 9831473 ~ 9845052 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location