XLOC_013558 (BX936456.1)


Basic Information

Item Value
gene id XLOC_013558
gene name BX936456.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 38859119 ~ 38865170 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026685
tttttattttagccAACAATTATTTTTAGTTTCACTATAAAATATAgagaataaacattattaaattaagtaataTATCATATACATAATAGCTAATAGTAGCTCAAATAAAATTTGCATACGAAATTTGCATGACTGAATGTTTTCCCTCTTTCCTTCTtccttttttattcttttcttcCTTTCCACATATtccacatagtttttttttttttttttttttatcaagaccTCATTTGGATTGGATGAAATGTTCAAGATCTCATTTGGATTGGCTGGAATCTTCAAGGCACACACAAGTGTGGAGTGTTTGAGCAGCATTGCTCAGCTCATTCAAGAGTCCAAGACGCAATAATAGAATTGTATTCTGCAGTCTGCTATCATTTGCCTGTTTGGAGTCCTGATATACTTCAGAAGCATATGTGGCTTTAAAGAAGAAGGGGCGAGAATCTGCAAACCTGATTAAAATCAACACAAGATGGACAACAATGcacaggCAAAAACAGCATCTGGAAAACTATGGGCAAATTTCCACTCAGGTCTAACAGCAGTACTAACTGTTGCTGTAGTTATAATAGTTATAACAGGTTATGCAATAATTTCAAAGGTTGTAGAAGCAATCGTAGGAGCAGCAGCAGGAGCGGCAGCTGGATTGGGAGTTTCACATTTGCAGTGGAACGAAGAAGAAAGATCAAAACCAGCAGCAACATTAGTAATAGCAGTAGTCGGAAGCATTGCAGGAACTGCAGCGGCGATGTTGCGATCATTGGTAGCAGCTTACTCAATAACAGGATCAGCAATAGTTGGAGCACTGGCAGGAGCTGCAATAGTGGCCCTAGCAAAAGGACTATTACAAAGGCTCATTGACTTTGTAAAGTTGCTAATGGATCATtggaatgaactgaaaattatgGGTATAGGAGCAATCTGTCTACTAGCAGTAGGAAAGCTAAAACAATTTGCAAACTGGCTGAGTGATAAAATGAAGCCACTCATGGATAAAATAAAGGGGATAGCAGACAACGTAAAAAAAGCAATACAAGGAATTACAGACCCAGTAAACAATTTATTCGCACCATTTGGAGGAGCAGGAGCAATCGGAGGAGCACTTGCTGCAGCATTGGGGTCAATGGGATTCGCATCAGCATTAGGATTGCTTGGAACAGTAGGAGCCATGTCAATCCTTGTTGGGGGAACAGGAATTCTGTATGGATTGCATTTGAGAGGGGAATTGAAGACACAAGCAAATAAGGTGGCGGAATTAGTTAATTCTGTGGGAGTGTTGCAGTTTTGGATTGTGGTGTTGcttctctttttgtttttaagtctTTTGCAGTGTTTCCGCTGTGAACGACACTGTTCATGCTAATCAGAAAGACATAAAtactagagcacaggtgtcaaactcagtttctagggggcctcagctctgcacagtttagttcacaccctaattaaacacacctcatcaaacTGATTAGGTAAAGCTTGTTTGAAAGCTACAGGTAATAGTGTTGGAggagggttgaaactaaactgtgcagggctgcggtttgagtttgacacccctgtactAGAGGATGCCTCAAAAAAAGATGAACGAGGAACTTGTTTTGGTTTATTTCTTTTAGCCATTTAACATTATAGTGACTGGGTTGAGATGTCTATTATTtgttactgtgaaaatttctttaggCCAGTCACAATAGCAACATTTTATACTTCTCTCTTATAAAACAAAGATCATTTACTGGCCAGGAATCATCCATAAAACCTTATTCATTCAAAGTTATTTATATGGGAAAGAAGGTTCTTTAGATCATTGATATATTCTTCACACTAAAAAAAATGGTTCTTTGAAAAACTTAActtttattacaaggttttgtggggaaccaaaatgtttttttatatatggcACATGTCTTTTTCAggcacatttattcattcattcattttcttgtcagcttagtccctttattaatccggggtcgccacagcggaataaaccgccaacttatacagcaagtttttacactgtggatgcccttccagctgcaacccatctctgggaaacatccacaaatacatacacactcatacactacggacaatttagtctacccaattcacctgtaccgcatgtctttggactgtgggggaaaccggagcacctggaggaaacccacgcgaaggcagggagaacatgcaaactccacacagaaacaccaactgagctgaggttcgaaccagcgacccagcgaccttcttgctgtgaggcgacagcactacctactgccccactgcctCGCCAATTTTTTAATTTTCCTAATTTTTGAAGTGGAAGTTTTGTACCTAAGAAATTTTATTTATAGGATGTTTACATACGTGAACCTTTACCATAAGTTTTtaggtatttgtatttgtatatcatctgaaagctgaataaatagaCTTTCCATTGGTGTATTTTTTGTCAGGGTACAATAATCTTTAGCAAGATACAACTATTCTGAATATctgaaggtttaaaaaaaaacaaatctaaatctaaattgtGAGAAAActgcctttaaagttgtccaaataaatatttttgcagaAACTTTGCAGTGTTGATGTGTAGCCTCTAAGAACAGCATGAGaaaaaccttttatttatatTCTTAAACTGTGCCTTAAAAGGTGTGCAGACAGCTCTGCAATTAAAATCATTATTGAATTGTCATtgaatttcagtttatttatgccTAGTTCACATTTCTGGATTTTAAGCCCATTTTGAGTCCAATTTGCAAGtcaaaattcaatttaattcaattcatctttttttctattgcacttttacaatgtagattgtttcaaagcagcttaaaatagaagattattgtaaattgaaaccgtgtcagttcagttttcagagttgaagtttaattcagtttagtgttgtttaaatttcactgctgaaagtccactgaagagcaaatccatcaatgcgcagctcaaCAGGTCCTGAACCATGCAAACTAGTGGCGACAGAGGCGAGAAACAAAcatcaacataataataataataataataataatgaagaagaTGTAGAAATTAATTTGTGgatgatggaaaaaaaaatacaaagttgAACATCTGTCAGTTGTTCCttaaaccaggctcagttgggcacgaccgtTTCTTCTCTGTCAATATTTTTAAGTCTAGACTTTTTTTCTTAGACATGTGGTTGATGGAATGTGTGACTGCTCCATAACCAGTTTGTTTTCATCTGATTCCTTTGGTAATTCCTTCtgaatatttgttttaaagcACATTGGTCTACGAAAGTTGTTAATAAGTGTGATATAGATATAAAATTGTCAATGCCCAATGCTTTTACATGATAAACCAGGAGATTTGACGTCCATCTCTGTTACTGTATGTCATCAGAGGATTATCCAGTCACTGAAATGTTTCTTGTAACTTAGAGGTCCTTGATAAGCTTATGTTCATGCTTTTAGAAGATAGATTATAATTACTCCTGACACCTTGAAACACATTTGAGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026685 True 3559 lncRNA 0.37 3 38859119 38865170

Neighbor

gene id symbol gene type direction distance location
XLOC_013557 NA coding downstream 90621 38759334 ~ 38768498 (-)
XLOC_013556 NA coding downstream 480914 38376678 ~ 38378205 (-)
XLOC_013555 NA coding downstream 561164 38290081 ~ 38297955 (-)
XLOC_013554 caprin1b coding downstream 587821 38246940 ~ 38271298 (-)
XLOC_013553 si:dkey-10o6.2 coding downstream 614057 38209055 ~ 38245062 (-)
XLOC_013559 NA coding upstream 4233 38869403 ~ 38870587 (-)
XLOC_013560 mapk6 coding upstream 304957 39170127 ~ 39288894 (-)
XLOC_013561 leo1 coding upstream 427741 39292911 ~ 39321484 (-)
XLOC_013562 NA coding upstream 517556 39382726 ~ 39389542 (-)
XLOC_013563 scg3 coding upstream 569419 39434589 ~ 39473055 (-)
XLOC_013384 BX323829.1 misc downstream 19316888 19542102 ~ 19542231 (-)
XLOC_013551 NA non-coding downstream 1307985 37541715 ~ 37551134 (-)
XLOC_013550 AL627088.1 non-coding downstream 1443674 37409823 ~ 37415445 (-)
XLOC_013565 BX908722.2 non-coding upstream 721376 39586546 ~ 39586665 (-)
XLOC_013566 BX908722.1 non-coding upstream 750605 39615775 ~ 39615905 (-)
XLOC_013569 NA non-coding upstream 926545 39791715 ~ 39796835 (-)

Expression


Co-expression Network