CI01000340_06980994_06986987 (RGS8)


Basic Information

Item Value
gene id CI01000340_06980994_06986987
gene name RGS8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6980923 ~ 6988414 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_06980994_06986987.mRNA
AGTCCAAGGAAATGAAGAATAAGCCTCAAGCATCCGGCAAATCACTAAAATATTCCCATCTTGAGAGAATTTGGATTGTTTGACAGACCGCAATTAGAAATTCATGATTTCTGCGATGCTTTACCAAAAGGGACATATGTTTAAAATGGTCATTAGTTGTAATTAGTCAAATGAAAAAAGATACAAAAAAAAGGTTGAAAAATAATACTAATAAATGATATGTCATCAGTTCCTTTAACTTGCACTCCATTTAGCAATATTCAGAAACAGGAAACTATTCAATAAAATACCACAAAACAAGAACAAACAGAAATGTGATACTTGACACAAATTAAACTGCCTTTTATGCCAAGAACTACCAAAGCTAACATGCAAGCACACAGATTAAAATATACCTTGTACCTCTTCTTTAATAACATCCGTGGTACACTGTAAACCCAAATAATTTGGGCTAACTCAAAAAAAAAAAAAAAAAAAAAAGAGGTAATCAGTTACATCAAATTTTTTGAATTAGGATATTCCCAATTTTAAGTAAGCAGAACTATCAAGTTTTGAGTTTGTAGTACTCATGCATGTTAATTGCTACTTACCTAAAGTAATGAGTTAGCTAACTCATACATTTTGATAGCAATTAACATAAAGTATTTAGTTATTTATTTAATTTTTATTTTTTTGAGTTCTTGCCAAATTTAATTATTTACTTCACTGTAAACCCTAATAAGAAAATTCCGAAAATGCCAACTTGCTAATATTCTAACATGTTAACAATAGCATGGTATAGCACTTACTGAATGAGTACAGCAAATTAAAACATGTAACTTACCTGCTCTAACTTACCAAACCACATGCACCACTTGTCACCATGATGGTAACTCTCCAAAAACACACATTAACAGAAACCCTTCTAAATTAGCATAAAAAACATTAATCACTACTAAATCTCCCACTTAACATTAATCTTACACACACACACACACACACACACACACACACAAAAAACATTATCTAACACATAATTTTAGCATTTACTCTCCCTTTCGAGTACCATGGGCAAAGCATGCTAGAAATCCCAGTTTCAGTTAAACTTAAGCTAGTATAAATAAAAAGAAATGAGTTCATACAACTCAAAATGATGAAACAGTTCAGTTTACTTGAAATATGTCAGTGCTGTAAACTCAAAAGAAAAAAAAAAGTTCTAAATACTCATTACAGTTAATTTAACTGAACTAATTTGTTCAATTTAAGTTTGTCCTACTCAAAACAATTAAGTATTTTGAGCGTTAGGGTTTACATACCAATGGCTTTTTTGATTCCCATCAAAGTGTACAATAACACAAAGCTATGTTCTCATGGTTTTTTTATACATGTTGAGAGGAATTACTCATGCCTATTTTCTGTAGAGGAATTTACAATCCTTCAGAAAAAGAATGGTCAATTTCATGCAGTGTTCCCAATTAAAAATAACTACATGTGAAAGCAATAGGTTGCATCAGCTTCTTGGACTGAAATGGGCCATGAAAACTAGACTAGGGTGCCTGTCTAACAAATCAGACTCATGCAGCGATTTTTCAGAATTCCTGCCTCCTGCTCAGGAGAGGTCCACAAGATACTTGAAGTTATCAAATGATGAAGTGACCAGATGGGCAGATTCATTTGATGCTCTGCTGTCCAATAAATATGGTTTGGCAGCTTTCAGAACCTTCCTCAAAACAGAGTTCAGTGATGAAAACATCGAGTTCTGGTTGGCATGTGAGGACTATAAAAAGATCAAATCCCCTGCTAAGATGATGTCTAAGGCCAGTAAGATCTACAAGGAATTTATTGACATTCATGCACCCAGAGAGGTTAACATAGACCACAGGACCAGAGAGGAAACCAAACAGAGGCTTCTGGAGCCAACTCCCAACAGTCTCAATGAAGTCCAAGCTAAAGTGTACAGCCTCATGGAAAAAGACTCCTTTCCTCGGTTTATAAGATCAAAGATCTATCAGGACTTACTGAACAGGACACAGATATACTGCCAGAGGAAATCTGTTTAAAAGTGAAAGTCTATGAAAGATGTCTATTTGCTTGCCTGGTTAGATGATATTGAGATATATAATATAATAAA

Function

symbol description
rgs8 Predicted to enable GTPase activator activity. Predicted to be involved in G protein-coupled acetylcholine receptor signaling pathway; positive regulation of GTPase activity; and regulation of dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and negative regulation of signal transduction. Predicted to be located in dendrite; neuronal cell body membrane; and nucleus. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in forebrain and retina. Orthologous to human RGS8 (regulator of G protein signaling 8).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_06980994_06986987.mRNA True 2110 mRNA 0.34 5 6980923 6988414

Neighbor

gene id symbol gene type direction distance location
CI01000340_06967769_06969169 RGS16 coding downstream 11715 6967002 ~ 6969208 (-)
CI01000340_06943742_06951136 RGS5, RGS5A coding downstream 29601 6943742 ~ 6951322 (-)
CI01000340_06795551_06907442 NOS1AP, C1H1ORF226, C18H1ORF226, C6H1ORF226 coding downstream 73481 6795551 ~ 6907442 (-)
CI01000340_06755244_06767885 UAP1 coding downstream 213038 6755244 ~ 6767885 (-)
CI01000340_06713482_06725854 DDR2, DDR2A coding downstream 255069 6713201 ~ 6725854 (-)
CI01000340_07094782_07128154 BRINP3A.1 coding upstream 106077 7094491 ~ 7128242 (-)
CI01000340_07316270_07338395 BRINP3A.2, BRINP3 coding upstream 327037 7315451 ~ 7339343 (-)
CI01000340_07347497_07355645 NA coding upstream 358406 7346820 ~ 7356850 (-)
CI01000340_07543307_07544545 HES1, HER6 coding upstream 554605 7543019 ~ 7544752 (-)
CI01000340_07546144_07547567 NA coding upstream 557265 7545679 ~ 7547567 (-)
G489940 NA non-coding downstream 3991 6976695 ~ 6976932 (-)
G489934 NA non-coding downstream 10346 6970246 ~ 6970577 (-)
G489930 NA non-coding downstream 47729 6932624 ~ 6933194 (-)
G489897 NA non-coding downstream 200077 6777797 ~ 6780846 (-)
G489875 NA non-coding downstream 309826 6670676 ~ 6671097 (-)
G489975 NA non-coding upstream 36401 7024815 ~ 7025051 (-)
G489979 NA non-coding upstream 40573 7028987 ~ 7029255 (-)
G490119 NA non-coding upstream 78526 7066940 ~ 7067314 (-)
G490101 NA non-coding upstream 95931 7084345 ~ 7084699 (-)
G490126 NA non-coding upstream 143027 7131441 ~ 7131700 (-)
G489511 NA other downstream 653551 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 760281 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 1655779 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 2321862 4598714 ~ 4627447 (-)
G488862 NA other downstream 2384662 4507196 ~ 4518120 (-)
G491712 NA other upstream 1810787 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 3033478 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 3368770 10356758 ~ 10359856 (-)
G493109 NA other upstream 4685332 11673746 ~ 11677994 (-)
G493266 NA other upstream 5078763 12067177 ~ 12116900 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location