CI01000340_07486593_07487826


Basic Information

Item Value
gene id CI01000340_07486593_07487826
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7486477 ~ 7487826 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_07486593_07487826.mRNA
ATTTAAAAAGTGCACTAGTATTCATTTACATACTTGTGCACTTGCACTGGAGCTGCACTGAAAATATATGTTCACCAAATAAAGACTGCAAAAATATAGATGTGTATGACGAAACTATGACAGCAATACCTGAAAAACTGAAAGATGGAGCCACTGAAGTATTTTTTGTAAACAGCCAGATTCCTGTCATACCAAAAGGAGCTTTTTCCAAAAACCCTCAAATGAAGAAAATCGAATTTATCGGGACTTCAACTACATCCGTAGAGGTCGGGGCCTTTGAGGGTTTACCTGATATCATAACCATTGAGATATCTGGCACAAATGTGACATCATTACCCGTGGGTGTTTTTAAGGATCTCATCAACCTTGAAAACCTTGTTTTAAAAAGTAACAAAATCCAACACCTTACAAAAGGGTTATTTGATGATTTAAAAATGCTTCAGAACCTAAATCTACATACTAATGAGATTAACTCTATTGAGGAGGGGACATTTGATAGTTTAGAGAATCTCAAAATTCTTCATCTTGCAAGAAACAACCTTAGTTCTGTATCGACATCTCTTTTTTCCAAACTTAAGAACTTGCGCGCTTTCAGGCTTTATGAGAACCAGCTGACCTCTATGCCTGATGGGATTTTTGATCATCTCCCTGATCTGACAGAGGTAGCCTTGCAAGGCAACAAAATCTCATTTATAAAACCAGTTTTGTTTCCACACAAAAGTAAATTAGTCAAACTCTTTTTGGACCACAATCTTTTAACTGAACTGCAGCAAGATCTTTTTGTTGGTTTCTCTTCATTAAAGACTCTTTCACTGGATAACAATCAACTCATACGTCTTCCCACTGTCCTTTTTGGAGAAATGCCTATGACTGATTTGAGTCTAAATCATAACAATCTCACTGACTTACCAACTGGAGTTTTCAGCCCACTTAAAAAGCTCAGGAAGTTAGACCTTTCATCAAACCAGTTTTCAATGATATCTAAAGACTTTTTTGAAGGTCTTGAGAAATTGTCTGATCTGAATCTTCAAAATAACAATATAAAGTCATTAAAAAAAGAGGACTTTGAAAAACTTCAGTCTCTTACAACACTTAAACTGGGAAATAATAAACTACAAAGCCTTCCTGGAGATGTTTTTGATGCTCTTCCAAAACTCAATAAACTATACCTTTACAAGAATCCATGGCAGTGTGACTGTAACCTGTTGGAATTCTTTGAATGGATAACGAACAATAAAAACAAGATTAAATCAAAACCTTCAGATGTTTGTGAGTCCCCAAAAAACCTGGAAAATCAAACAATATCCTCTTTAACAGAAGAACAATTAATATGCCTCACAACTTTACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_07486593_07487826.mRNA True 1350 mRNA 0.35 1 7486477 7487826

Neighbor

gene id symbol gene type direction distance location
CI01000340_07482030_07483694 NA coding upstream 2575 7482030 ~ 7483902 (+)
CI01000340_07451476_07454866 RHCG, RHCGL1 coding upstream 31065 7451374 ~ 7455412 (+)
CI01000340_06927893_06929574 NA coding upstream 556804 6927788 ~ 6929673 (+)
CI01000340_06769655_06778207 UHMK1 coding upstream 708270 6769655 ~ 6778207 (+)
CI01000340_06702811_06703207 NA coding upstream 783046 6702811 ~ 6703903 (+)
CI01000340_07641488_07649078 NA coding downstream 153320 7641146 ~ 7649494 (+)
CI01000340_07692812_07697115 TMEM45A coding downstream 204986 7692812 ~ 7697333 (+)
CI01000340_07698442_07700739 NA coding downstream 210616 7698442 ~ 7700739 (+)
CI01000340_07701724_07717637 CHD1L coding downstream 213560 7701386 ~ 7717852 (+)
CI01000340_07721395_07728614 TRAF3IP2L coding downstream 233569 7721395 ~ 7728752 (+)
G490181 NA non-coding upstream 238053 7248217 ~ 7248424 (+)
G490045 NA non-coding upstream 332954 7153294 ~ 7153523 (+)
G490013 NA non-coding upstream 394344 7091867 ~ 7092133 (+)
G490008 NA non-coding upstream 401179 7084977 ~ 7085298 (+)
G489984 NA non-coding upstream 450635 7035644 ~ 7035842 (+)
G490294 NA non-coding downstream 6853 7494679 ~ 7495208 (+)
G490290 NA non-coding downstream 8616 7496442 ~ 7502162 (+)
G490347 NA non-coding downstream 30540 7518366 ~ 7518584 (+)
G490353 NA non-coding downstream 44654 7532480 ~ 7532700 (+)
G490361 NA non-coding downstream 64788 7552614 ~ 7553152 (+)
G489634 NA other upstream 785689 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 2821292 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 3084981 4399419 ~ 4401496 (+)
G487133 NA other upstream 3503932 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 4554677 2930635 ~ 2933935 (+)
G490645 NA other downstream 1550986 9038812 ~ 9043101 (+)
G490826 NA other downstream 1637358 9125184 ~ 9131397 (+)
G490839 NA other downstream 1747147 9234973 ~ 9237559 (+)
G490896 NA other downstream 2343647 9831473 ~ 9845052 (+)
G492194 NA other downstream 3163857 10651683 ~ 10652694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G50860 NA non-coding NC_053116.1 CM020913.1 18267465 ~ 18267887 (+)
tiger barb (Puntius tetrazona) G45930 LOC107582740,LOC107685313,LOC107722678 non-coding NC_056704.1 CM032073.1 17514638 ~ 17518605 (-)