CI01000340_08007878_08016645 (CTH)


Basic Information

Item Value
gene id CI01000340_08007878_08016645
gene name CTH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8007697 ~ 8017282 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_08007878_08016645.mRNA
ATATTTTTGGGCTGTGCCCAAAACCAAAATGACATGCCAAACTGTCTGCATTGGCTATAGCGCGAGTAATCAAATGAATGGAACTTCCTGGTGATTTTAGAAAGTGTAGGCTAAGGAAATGCACTTGCCATAGGCTATATGTAAGCAAGCAAGTAAGTAAATAAATACATTAATTAATACATTTCAAAGTTAAAATAATTTGTAAATTTTATTTTTCATATTACCTTGAAGTTTCACAAAATGTTGTTTGATTTTAACCCATAAACACTGTCAGAACAAATTTGACGTGTTGTTAAATGTTCTCAAAAGCTGTCAAATCATATAGATAGATAGACAGATAGATAGATAGAATAAACTTGGTTAATTGATTGGTTTAGTTTTTTAGATGTAAATGTTGCATCATCAGATCACTATCATTGCGCTGAACCCTAACACTGATCACGTGACTCAGCACGCCCCTGCGTAATCGCCAATCCCCTCTATGTCCTACACTACACATATAGTGATTGGCGTAGAAAGGTTTTTTTGCTATAACCCTCCCGTTTACTGTAAACCATTTACAGTAAGTAAGAGAGAGCTGTTCACTCTGTGATCTCAGGAACCCGGTATCTCATCGTCAGCCATATCCGGAGTACGCATGGCTTCACACGCTCAGAACGACAGCTCAGCCGGCTTCCAGCCGGTCTTTAAATCGTTTGCCACAGATGCGATCCACGTTGGTTCAGAGCCGGAGCAGTGGAACTCTATGGCCGTAGTGCCTCCCATTTCATTGTCTACCACCTTTAAACAGCATGAACCGGGAAAACACGCGGGATTTGAGTACAGCAGGAGTGGAAATCCCACTAGAAACTGTCTTGAGAGAGCAGTTGCTGCTTTGGATGGTGCACAATACTGTCTCGCTCTTGCCTCTGGATTGGCTGCAACTTTGACCATTACGCATCTTTTTAAGGCCGGAGATGGAATTTTGTGCATTAATGATTTATATGGAGGAACTAACCGATATTTCAGGAAAATAGCTGCAGAAGTTGGCCTTGATGTCTCTTTTGCTGACCTCACAAAGCTAGAAGAGCTAAAGGCAGCTCTAAAACCAAATACAAAGATGGTATGGATTGAAACGCCCACAAACCCTACTATGAAGGTTGTGGACATTCAGGGTTGTGCAGATATTGTCCATGAGCACAACAAGGACACAATTGTTGTTGTGGACAACACTTTCATGTCAGCCTACTTCCAGCGACCCCTTGCACTTGGAGCAGACATCTGCATGTACTCTGCAACAAAATATATGAATGGACACAGTGATGTTGTCATGGGCTTGATTTCTCTCAACCGTGAGGACCTCTATGAACGGCTGAAGTTTTTGCAAAATGCACTTGGTGCCGTTCCCTCTCCATTTGACTGTTATATGTGCAGCCGGGGTCTGAAGACACTGCACCTGAGAATGAAGCAGCACTTTAAGAACGCACTGGCTGCGGCACAGTTTCTAGAGGCCGACCCAAGAGTGGACAGCGTCATCTTCCCAGGTGTCTATGATTTTATTGTCACATTACATAGAAGTGTATGTCAGTTGTTTGCGCTTGCTGAAAGTCTTGGTGGTTATGAGAGTCTAGCAGAGCACCCAGCGATTATGACTCATGCTTCAGTGTCTGAGAATGAGAGGAAAGAACTGGGCATCAGTGATACTCTCATTCGTCTGTCGGTGGGCCTGGAGGATGAGGAAGATATTATTGCAGACCTAGACCAAGCCCTCGCTGCTGCAGCTCCTTTCATGCTCTGCTTTCCAATTTTCACATATCTAAAAGAGAATATATTGTTTGATTCACACCCACCCATCACAACAATGATGGCTGATCATTGACAATGTCATAATGATTTTAGCAGGATTTTGCCATTAACATAAAATGCTAAATATTTTTAGTTTATTTTTTGGTTGCACGACCAACTTTTAAACTATTTTGCAACTACTTTGCAACATTTTCACGGTAGGTTGGTGATGGCATTGAATCCTCCTAATTCTTCTCCTGACCTGAGATAATAAA

Function

symbol description
cth Predicted to enable cystathionine gamma-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in cysteine biosynthetic process via cystathionine and transsulfuration. Predicted to act upstream of or within cysteine biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and cystathioninuria. Orthologous to human CTH (cystathionine gamma-lyase).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_08007878_08016645.mRNA True 2039 mRNA 0.42 11 8007697 8017282

Neighbor

gene id symbol gene type direction distance location
CI01000340_07994499_07999442 CTH, CGL coding downstream 8046 7994499 ~ 7999651 (-)
CI01000340_07778322_07787234 NA coding downstream 220234 7777743 ~ 7787463 (-)
CI01000340_07651745_07673195 OPA1 coding downstream 334026 7650988 ~ 7673671 (-)
CI01000340_07546144_07547567 NA coding downstream 460130 7545679 ~ 7547567 (-)
CI01000340_07543307_07544545 HES1, HER6 coding downstream 462945 7543019 ~ 7544752 (-)
CI01000340_08020667_08025048 NIT2 coding upstream 3173 8020455 ~ 8025048 (-)
CI01000340_08029268_08031877 NA coding upstream 11800 8029082 ~ 8032004 (-)
CI01000340_08036162_08043659 PLCXD1 coding upstream 18046 8035328 ~ 8044456 (-)
CI01000340_08050696_08058355 JADE3 coding upstream 32992 8050274 ~ 8058355 (-)
CI01000340_08067248_08072622 RP2 coding upstream 48742 8066024 ~ 8072914 (-)
G491427 NA non-coding downstream 61063 7946374 ~ 7946634 (-)
G491417 NA non-coding downstream 63551 7943885 ~ 7944146 (-)
G491415 NA non-coding downstream 65862 7941541 ~ 7941835 (-)
G491410 NA non-coding downstream 74682 7932794 ~ 7933015 (-)
G491402 NA non-coding downstream 89498 7917965 ~ 7918199 (-)
G491448 NA non-coding upstream 100279 8117561 ~ 8119786 (-)
G491475 NA non-coding upstream 111620 8128902 ~ 8130505 (-)
G491471 NA non-coding upstream 168014 8185296 ~ 8185607 (-)
G491565 NA non-coding upstream 415329 8432611 ~ 8435645 (-)
G489511 NA other downstream 1680325 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 1787055 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 2682553 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 3348636 4598714 ~ 4627447 (-)
G488862 NA other downstream 3411436 4507196 ~ 4518120 (-)
G491712 NA other upstream 781919 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 2004610 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 2339902 10356758 ~ 10359856 (-)
G493109 NA other upstream 3656464 11673746 ~ 11677994 (-)
G493266 NA other upstream 4049895 12067177 ~ 12116900 (-)

Expression


Co-expression Network