XLOC_013563 (scg3)


Basic Information

Item Value
gene id XLOC_013563
gene name scg3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 39434589 ~ 39473055 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026693
AGGAGCTCCATCAGCTTATCCTCTGTTAATTATAGCCAGCGACCTGGTTTCAGCACTGCAGGGACTCAACAGCTCCCGCGCATCTAAAGCCTTCGCGCGCGGCATCCAGCCAACAGCAGCGCGCTCACGAAACCAAACCAGCAGCGCGTTCGTGTTTACGGAGGACAACAGAGGGATAAAAACATCGCAAAACTACACGTTTCCGACATAAGCTGGAGGATGGCGTCAAAACGCTTAGGGTTTGTGGTGGTCCTTGCTTTAGTTTGTCAGCATATCAACGCGTTTCCCACACCTGCCGGACCCGACGACAAGTACAACCGTGAGCTGACTGAAGAGAAGCCTTTAGAACAGCAGATTGCAGAAGCTGACAGTATCAGGAAGACAGAATCCAAGCCAACACCGCCAGCTGAGGAGGAAACAAACTCAGAGGACGATGACATCACTTTCCTCAAAGCTCTGGCAGAGAAATCCAAAGAGTCGAACAACGAAACTCCCATTTCAGATTCTGCAAATGAGCGTTTGGGAGCTGATGACACCGACTCTACCAAGAACAGAAGACTGGCTGATGACTATGACTCCACGAAGAATGGGATGGACTACAAATAtcaagATGACCCTGAAAGTTTTCGGCAGCTGGACGGAACCCCGTTAACAGCTCAGGACATCGTCCAGAAAATCGCCAACAAAATCTATGAGGAGGATGACAGAGGAGTTTTTGACAGAATCGTGTCTAAACTGCTGAAGCTCGGCCTGATCACAGACAGTCAGGCGGAGACGCTGGAGTATGAAGTCGCCGAAGCTCTGCAGGATCTGATCACCAAAAACGCCAAAGATAACATGATTGGAGATCGCAGTGTGGATTACCCTGTCAGTGCAGCTAAAGACACACAGGATGAGGAAGACAGACCTAGTCCTCGATTTGATGAAGAGGATGAAGTTGAGAATGAAGGTGGTGATGATGCTAATGGTGATGAACCACAGGAGGAGGAGAGCAGAGATGATACGGTTAGGTCGGATGACTCATGGGATGCGGTGAGCGACGGGAACGACAGAAATGAACTGAACCCTGAAGACGGACTGCAGGACCTTCAGTTCTTCCCAAACTTCTACAGACTCCTCAAGAGCCTCGACTCAGAGCAAGATAAAGAGGAGAGGGAAACCCTGATCACCATCATGAAGACCTTGATTGACTTTGTGAAGATGATGGTCAAATATGGAACCATCACACCTGAAGAAGGAGTGACTTATCTAGAAAACCTGGATGCCATGATTGCCCTGCAGACCAAGAACAAACTTGGCAAATCTCTGGTTCCTCTGAGCATTACACCACCTACAGGAAAAGCAGCAGATGATGATGACAACACCAAAACAGAAGCTGCCAAAATGCAGAAGGAGTATGAGTCCCTGAAAGACTCGACCAAAGATGTCCAGACTGCTGCGGAAATCAGTCATCCTGGGAAGTCTGAGAGTTATTTGGAGGCGATCAGGAAGAACATCGAATGGCTGAAAAAACACAACAAGGAAGGCAACAAAGAAGATTATGACCTCTCCAAACTGAGGGACTTCATGGACCAGCAGGTGGACTCCTACATCGATAAAGGCATCCTTGAGAAGGACGAAGGTGACGTTATCAAGAGAATCTACGGAAGCCTGTAGGAACAGCGCAAGCGCTAAGATCTACTAAATACTCGGACCGGCATATTAACACAGATCCTAATGCTAGAACTCCTAATAAATCATATTTAGTCTGCGAATCAGACAGTATTTCTAATTCCCTCCCGATGGCAATATCTTCTCTCAGTCAGCAATAGAACACAATCTAGTTCTAGACGAGCCACAATCACATCTGAGTTGTAAGTGTTCTTACGCATTAGGACAGAACATGTGCATCTGCTACCTAGAAGATTGAAATTCAGTGGGTTTTTTGCTATGACTTGCAGATCAGTGAAAATAGAAGCTTTTGCAACTCTTTCGCAATAGACTTTTACAGCGCCATATGCATATATCTGTACGTAAACATTCACTCATGTATGGTGTATAGCATTCGCTAATCTTTTGATCTTTTTTGATGAAGGAAATTAAcgtattattattgtttctcCGTCGACCAAAAAACATCCAAAAACCAATCAGCTTTGACTGTCATTAAATTGCTTTCCTCTTCTGTTGTGGTTTTGTCTCCCAGTCTACAGGGGGCGATCTTTACATCTCCCTTCTCTATCTTTAATTACGTTTCTCGGTTTGGGTTTTCCGTTTTTCGACTGTGTATATTCCACATGCTAGAGATTCACACACATcgagtatttttaaatgtaaatattgtgatttttttccaGAAATCTATTAAACATTGCCTTTCTTTAATTA

Function

symbol description
scg3 Predicted to be involved in protein localization to secretory granule. Predicted to be located in extracellular region and transport vesicle membrane. Predicted to be active in secretory granule membrane. Is expressed in endocrine system; nervous system; and neural tube. Orthologous to human SCG3 (secretogranin III).

GO:

id name namespace
GO:0033366 protein localization to secretory granule biological_process
GO:0030667 secretory granule membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0030658 transport vesicle membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1725 Predicted to be involved in protein localization to secretory granule. Predicted to be located in extracellular region and transport vesicle membrane. Predicted to be active in secretory granule membrane. Is expressed in endocrine system; nervous system; and neural tube. Orthologous to human SCG3 (secretogranin III).

Ensembl:

ensembl_id ENSDARG00000086288

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026693 True 2367 mRNA 0.45 12 39434589 39473055

Neighbor

gene id symbol gene type direction distance location
XLOC_013562 NA coding downstream 45047 39382726 ~ 39389542 (-)
XLOC_013561 leo1 coding downstream 113105 39292911 ~ 39321484 (-)
XLOC_013560 mapk6 coding downstream 145695 39170127 ~ 39288894 (-)
XLOC_013559 NA coding downstream 564002 38869403 ~ 38870587 (-)
XLOC_013558 BX936456.1 coding downstream 569419 38859119 ~ 38865170 (-)
XLOC_013564 tnfaip8l3 coding upstream 49413 39522468 ~ 39583601 (-)
XLOC_013565 BX908722.2 coding upstream 113491 39586546 ~ 39586665 (-)
XLOC_013566 BX908722.1 coding upstream 142720 39615775 ~ 39615905 (-)
XLOC_013567 cyp19a1a coding upstream 147480 39620535 ~ 39636348 (-)
XLOC_013568 dmxl2 coding upstream 196200 39669255 ~ 39787040 (-)
XLOC_013384 BX323829.1 misc downstream 19892358 19542102 ~ 19542231 (-)
XLOC_013557 NA non-coding downstream 666091 38759334 ~ 38768498 (-)
XLOC_013556 NA non-coding downstream 1056384 38376678 ~ 38378205 (-)
XLOC_013569 NA non-coding upstream 318660 39791715 ~ 39796835 (-)
XLOC_013570 NA non-coding upstream 381432 39854487 ~ 39859108 (-)
XLOC_013571 NA non-coding upstream 891256 40364311 ~ 40452290 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_06699921_06724610 SCG3 coding CI01000028 null 6698870 ~ 6724699 (+)
bowfin (Amia calva) AMCG00007526 NA coding CM030123.1 CM030123.1 21322232 ~ 21335390 (-)