CI01000340_08970483_08982079 (B4GN1, B4GALNT1B, B4GALNT1)


Basic Information

Item Value
gene id CI01000340_08970483_08982079
gene name B4GN1, B4GALNT1B, B4GALNT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8970442 ~ 8983411 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_08970483_08982079.mRNA
TAATAAATACATGTGTAAATGAATGCACTTCAGCTGACATGATGACTAAGGTTTTTTCTACCTCAGCAGATGGAGAGTGCCCTCCATCAGCCTCATCAGCTACTGTCAATCACATCAAGATTGAGCCAATCGCTTGTAGCATGCATTCCCTACGTAAGACTGTGCTGTTAGCTCTGGTAGCATCAGTGGTGCTGGTTTTGGCTGTGCTACATTCCTGGCCCACGCGGGTCTACAGCACTGTGGATGTCCGGTACAGGCCAGGTCCTGGAGCTGAACGGCTACTGGAGGAGAGACTTCCTGAACCGGATCCCAGTGCTAGTACCATCCCTTACCGTGTGAGGGAGAGTGTGGCCAGGCTTTTGGCTCGCAACGGGTGTGTTTGTGAAGGAGAAAGCCGAGGGGTCAACCTGCCCTTTGCTCAGCTACTGTTCCCTAGAGTGTCTGCCCATCCCCTGCACACTGCCTTCCAGGCCTCCCAGCTCCATGAGATGAAGAAACGGCGAGCCAAAGAGTATCAGAGCTTCCAAATGAGGTCGCAGACCCCTGCTGATCTGCTGATTGTAGCTGAAGCTAACAACCCCCTGCAGTACCCAACACAGGGTGTGGAGGTTCGGCCACTTAAAACTATCCTTATACCAGGTTTGTCCTTAAAAGAGGTGCCCAGAGATTTCTATACTCTGAACTTTTCAGCATCTCTGGGCACATTTAATGTGGCAGCAGAAGTGGAGGGGGTAAAGATTAGGGGTGATGGCGAGATGCATATGACACTGAACAGTGGCCTTTTGTCCAGTCTGAATCGACAGCTCCAGTTTATCACATATACTAACACGCTGTTCCACCCAAGCACAGCTGACACAGTGCAGTTAGACACAGAAGGACATCAGGCTCTTTTCACCATCAAGATTCGTCATGGAGTAACACCCAAACTCTACAACACAGGCTCTGATGCAGATAAAGAATACAACATCAGCGCTCTTGTGACCATAGCAACCAAAACCTTCCTGCGCTATGACAAGCTCCAGGATTTAATTGACAGCATACGACGGTACTATCCAACTGTTACAATAGTGATAGCAGACGACAGTGAACACCCGAAAACTGTGTCAGGCCCATATATTGAACATTACATCATGCCCTTTGGAAAGGGCTGGTTTGCTGGTCGTAATCTGGCCGTGTCACAGGTCACGACCAAGTATGTGCTGTGGGTGGATGATGACTTTATCTTCACTGCCAACACAAAGCTAGAGAAGCTGGTGGATGTGCTGGAGAAAACCACACTTGACCTGGTTGGAGGCGCAGTGCGTGAAGCTACAGGCTACACTGCCACCTACAGGCAGACAATCTCAATTGAGGCTGGAGAGGAAGATGGGGACTGTCTGCACATGCGGAGAGGCTTCCATCATATCATCCAGGGGTTTCCTCACTGCGTGGTCACTGATGGAGTCATCAATTTCTTTCTTGCCAGGACAGATAAAGTGCAGCAGGTTGGCTTTGACCCCCGGCTAGCCCGTGTTGCTCATCTGGAGTTTTTTATTGATGGGCTCGGCTCCCTGCACGTTGGGTCATGTGATGATGTCATCGTGAACCACGCCACTAAGATCAAGCTCCCGTGGGGCCAGTCGGAAAGCGACAAAACTTACGCAAAGTTCCGTTACCCTCCTGCTTCATCTGATGCGACACACACCAAAAATGGCCTCTTGTACTTCAAAAACCGCTTCCAGTGTCTAACACACAACTGAACCCGCTCTGACAATGCCTTCTTCCCTTTCTCTCATCCTCCCTCAAACGAACACTCTCTCCCTGAGTAGCTAAAGGGGCCCGTGAAGACACTAGAGGTGTGCTGTGTATACTGTATATGGTCCCATGTGAGTAAAAGGGAGTTCTTTTGGAAAGGGTCCTAATGTGATCAAACATGACTGACAGATGAGAAGTGCAGTGATGGCTGATTAACATTATTTTGATACCTGAAGATGTCGTATTTTTGTGTCTCCTTTCTTTAGCTTTATTTTTGCTCAGAAGAATTCTTTAGATACAGATCAAACCATTCCGTAAATTATGCACAGCCGTCTTTTTTCTCCTCAGCCAATCATGTTTCAATATCACATTTAAAGGGATAGTGAGCCCAAAAATGAAAATTCTGTCATAATTTACTGACACGGATGTTGGTTCAAACCATAAAAGAGACTTCCAAGCCCCATAATGACACGGGAGTAAGTAAATTATGACAGAATATTTTATTTTTGAATTAACTAGTCCTTTAACCGACGAGAGTACACAAGTTTCTTTTGAAACTGAAGAACGAAGAGAAAACTGTGGAGGTAAACATTTGAACTATGACTTTTAGAATTTTTAAATCCAGTTCAAGGGAGACACTTTCTTTGGGACATTCGCATGGAATGTCACATCAGCTCCCTGTCTGGCATTAATCGTGTATGTACCTGTGTATGTGTGTCTGTGTGTGTTTTATTGAGGGTCGTCTCTCTGTACGTTTGCACTAAAACAAATGGACTTCAATTGGAGAGACCAGACCCTCAGCGTCACGGAAAGAAGGAACAGACTGAACATCATTAGCAAGCTAAAACCACAGACAATCCAACATATCACTCTCATTATCTCTCTTTCCCTCTCCCATACACACTCTGTCAGATTTCTCAGCGAGAGAAGGAGGAGTGATTCATTGTGTATCAGTGAAACCTTCTGAATTTGATATTTTTCCGTTCTAAAGAGTGACTGTGCCAAAGGCTGAATCACTGTCCCGGTATGGTTTATTTATTTTTTGTACGTTTTTATTTCCTTGATTCTGGGGTCTTTTTTAGATTTCGTCCCATTGTACTGAAGCATGCAGCCTGGTTTAAGTATCAGCCAGATGTGAAGCAGTAATGTGAAGTCCAATGCCACCTTTTATAAATTTAGTTATCAGTCACCCATCATGAGCATATAGTCCAAAGGCACTTACTGTAATTGCATTTTTATTGTGTTTGAGCTGGATTTCAACCAAAGCCAGTTTTGGTGGAAAAAAAGGTCCAGTCAGTTGCTTTTGCTATGCAGAATGGCTGAGACAACTAACCTTA

Function

symbol description
b4galnt1b Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in ganglioside biosynthetic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1).
b4galnt1 Enables (N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity. Involved in ganglioside biosynthetic process. Predicted to be located in Golgi membrane. Implicated in hereditary spastic paraplegia 26.

GO:

id name namespace
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00725 B4GALNT1, GALGT; (N-Acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_08970483_08982079.mRNA True 3071 mRNA 0.45 11 8970442 8983411

Neighbor

gene id symbol gene type direction distance location
CI01000340_08938200_08942073 NA coding upstream 27818 8938152 ~ 8942624 (+)
CI01000340_08905333_08906557 GPR84 coding upstream 62441 8905333 ~ 8908001 (+)
CI01000340_08895637_08897909 PRSS60.2 coding upstream 72152 8895370 ~ 8898290 (+)
CI01000340_08882602_08883850 PRSS60.1, PRSS60.2 coding upstream 86592 8882602 ~ 8883850 (+)
CI01000340_08774019_08777325 SLC48A1B, SLC48A1 coding upstream 192140 8773837 ~ 8778302 (+)
CI01000340_08999872_09005509 NA coding downstream 16027 8999438 ~ 9005984 (+)
CI01000340_09053887_09057663 NA coding downstream 70476 9053887 ~ 9057663 (+)
CI01000340_09064514_09065350 NA coding downstream 80760 9064171 ~ 9066523 (+)
CI01000340_09133213_09134688 METTL7A coding downstream 149071 9132482 ~ 9134688 (+)
CI01000340_09137611_09140263 NA coding downstream 153299 9136710 ~ 9140263 (+)
G490762 NA non-coding upstream 60172 8909939 ~ 8910270 (+)
G490759 NA non-coding upstream 68659 8901571 ~ 8901783 (+)
G490746 NA non-coding upstream 107073 8863105 ~ 8863369 (+)
G490745 NA non-coding upstream 107357 8862784 ~ 8863085 (+)
G490739 NA non-coding upstream 109925 8860199 ~ 8860517 (+)
G490648 NA non-coding downstream 7739 8991150 ~ 9016552 (+)
G490800 NA non-coding downstream 68591 9052002 ~ 9052146 (+)
G490823 NA non-coding downstream 135198 9118609 ~ 9119265 (+)
G490829 NA non-coding downstream 180755 9164166 ~ 9164806 (+)
G490808 NA non-coding downstream 194433 9177844 ~ 9218507 (+)
G489634 NA other upstream 2269654 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 4305257 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 4568946 4399419 ~ 4401496 (+)
G487133 NA other upstream 4987897 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 6038642 2930635 ~ 2933935 (+)
G490645 NA other downstream 55401 9038812 ~ 9043101 (+)
G490826 NA other downstream 141773 9125184 ~ 9131397 (+)
G490839 NA other downstream 251562 9234973 ~ 9237559 (+)
G490896 NA other downstream 848062 9831473 ~ 9845052 (+)
G492194 NA other downstream 1668272 10651683 ~ 10652694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location