CI01000340_09039154_09043792


Basic Information

Item Value
gene id CI01000340_09039154_09043792
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9038823 ~ 9045639 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09039154_09043792.mRNA
ACCTACATATATTACATGGAAGAAAAACGCCGTCATGTTTACAACTGTGAGAATGAGCGCTTACCAGGATCAACTAAACGCTGGATTTTCAAATGTATGTGAAGTTCGCAGCTCCATTGTTGCAGTAAACTTGCACAACGTTCTTGAATGAATAATTTATTAGATGCACGCCAGTCTATTATTGTAGGGACATCGACTTTACATTTTCACACTCCTAAGCATGGCGCGGAACAAAACAAACTGTGATTGGTTGTGTTACTTGTCAGTCATAAGGCCTGGCTATGTGAGACTATGTTAGGTTTAGTAGAATAAGGGGTTAGGGTTAGTAAAAATTTGACATTTACTTGTAAAGTTACTTATAGTCATTAGAATGTCTGTTGGGGGACCATCAAAATAAAGTGTTAGGCCACCTTTATGTAGATTTGTGTTTCTTGCACTATAGAGTACCTCAGAGATGACGTGTTTTTGTATGCAAAACCCGGAAGCGAGTAAGCATTTTAGGACTTCCGGTTCCATTGCCCCAAAGTCAATGGGTTTTTTGAATGTGTTTTTGCTAAATCGCCTGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCACGTTTTGATATATGACATAAAACACACCAGTTATAACCCGCTTGTGATTTTTTTTAAAACCTTTATTGTGTCTTAAAAACGGCGGTTGCTAACAAATTGCTAAAAAGGTCTACTTCCTTTGGCGGGGACTTTAGACGTCATCATGACAAACAGGACATTTGGACAGCATTTCTCATGAAAAAGTGGATAAGTATACATACACACTGCAGATCATAATCAGCGAGCATGTTTTTAAATAAAGTTGTTTTCTAAATAAAGTTTGAGGACGCTTGGTGACGTTGATCTGCGACCATGGTGTGCTGTAGTCCGTTTATAGCCTACTGTTAGCTTTTTATATCTGACGACTTTATTTAGGCTTCAAAATGTATCAATGTTGTGCTAACTAGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTCGATTCTCCAAAAGTCTATGGGAAAAATGCATAGGCTTTCGATCGAGGGAACCCGTGCGCCACTAACTTCCGGGTTGGCCTACAAAATCACGTCATCCCTGAGGTACTCTATTGCACCTCTTGGGCAAGCTGTCATATTTAAAGGGAGAGTCCATCCATTCCTCACGTCGTTGCAAATGTTTATACATTTCTTTCATTTCATTTGCTGAACACAAAAGAAGATATTTTGAAGAATGTTGGTAGCCAAACTGTTTTGGTCCCCGTTAACTTACATTATATATTGTTTGTCCATATGGTGGAAGTCGATAGGAACCAAAACTCCTTGGTTACCAACATTCATCAAAATATCTTCTTTTATGTTCAGCAGAAGAAAAATAGTCATGAATGACATGAGGATGAGTAAATGATGACAGTCTTTTCATTTTTGGGTGGACTCGTCCTTTAAAAGGTGCGCTTATCCAGGGACTTTCCTGCTGATTCATAGTTTATAGATCACACATCTAGAGAAAAGAAAAAAAAAAAATATCTGAATGATTTTTCTGTATAGGTTCACAAGAACGTATTACATTCTTAATATGAATATGTCATTCCATTAGGTACTCAATTTAAAATAAATTCTATGACAAATCTTTATGGAACAAACACAAAAAATCTTTAAATTGCGTTATGTTAGTAATTCAAATATTTTAAACTAATGTAGTATATTTGTAGCCTATATTGAGAAAGAATTTTATTTTGTAGTATACTATCGCATGGAGGTCACATTCAAAGGGTTGGCTGCAATAGGATGACTGTAACAGAAATATGCACACAGTTTCAAGTCTTGGACTGTTATCTTTACAACAAGTTGGATGGATCAGCCCATGATGCCTTTTGTCTCCAGAAAAAGATGCTGAACACGAAGAAAACCGTGAGGTCATTCAGCAGTCACTCCTCAGTAGGTGTGAGCAGGAACAGGAGGACACCCCTCACCCGTTCAGGGATGGTTTCGAGGGAAGGTTGGGGCTCCAGTCCAGATGTCTGCCCTCCAATTACAGCTGTAAAGGTCAATGAAAGTCTTCTGGCACCTCTGAACCTAGAGATTGACCCGAACATCCAGGCCATTAAGACTCAGGAGAAAGAGCAAATCAAGACGCTGAACAACCGCTTTGCTTCATTTATTGACAAAGTGCGCTTCCTAGAACAGCAGAACAAGATGCTGGAGACAAAATGGAGTCTCTTGCAGGAACAGACCAGCCGCCAATCCAGCATTGATATTATGTTTGAGACCTACATTGCTAACCTACGCAGACAGCTGGATGGTTTAGGGAACGAGAAGCTGCGTCTGGATTCTGGCCTGCGGGACATGAGCAGCCTGGTAGAAGACTTCAAAAGCAAGTATGAAGATGAAATCAACAAACGGAATGATTCTGACAATGAATTTGTGCTGCTTAAAAAGGACGCCGATGGTGCATACCTGAGTAAAGTGGAGCTGGAAAGTAAACTAGATGGCCTAACAGATGAGATCAACTTCCTTTGGCAGATTTACGAGGCGGAATTGCGTGAGCTCCAGACTCAGATCAAGGACACGTCAGTTGTTATAGAGATGGACAACAGCAGAAATCTGGACATGGACGCCATTGTGGCTGAAGTTCGTGCTCAGTATGAGGACATTGCCAACCGCACCCGTGCTGAAGCAGAGAGCTGGTACCAACAGAAGTATGAAGAAATGCAGTTGACAGCAACCAAACATGGGGATAACCTGAAAAGCACAAAGGCTGAAATCGCAGAGTACAACCGAAGAATTGCACGTATACACTCTGACATGGAACTTATTAAGGGACAGCATTCAAACCATGAGGTGCAGATCAAAGAGGCAGAAGAACGTGGTGAACTAGCTGTGAAAGATGCAAAACTCCGTCTGCAGGAGCTGGAAGCAGCTCTTCTGAGAGCTAAACAAGACATGGCTCGACAAGTGCGCGAATACCAATCGTTGATGAACATCAAACTGGCTCTGGACATTGAGATCGCCACCTATCGGAAACTCCTGGAAGGAGAAGAGAGCAGATTATATAGTTCATTCCAGACTTTCTCCATCTCTAAACCAACCTCGTTGAACTACGACCTTGAAAGCAGCCACCTCTCCTCCCAAAGTGCTGGGAAAGACGTTCATAACACAGGCCTGGTTAAGAAGGAAGTCATGATTGCTAAGGGTGATAGCGCTAGCAGCATCACCAGCAGCATTGCCACCATTACCAAAAGCACAAAGACCACCATCATCACCAGTGAGACAGGGAACAAACTTGCAGCTACAGAGGGAAGTGTGCAAGTGATGGATAAATCTGCAGGCAAACTAGAGGAGGATGTTTTTGAATGACAAAAGAACAGATGAAAGGATTGTCTTGTGTACAGGGCCCAGGATCAGGTTTTTATAGGTGGGCCTCCACCACCTTCCCTCAACTCCATTAGCATGTTGAGTTTAGTATCTGTGGCTAAGGTGTGGCAGATCAAAATGAATTACAGTTATACAGTATATCATATTCAATATGTAGTAAATTTACATGGCCCTACGACAAACTCATATAATTTCTATTTTGTTCCCTATAACTAAAAATGACAATGTCTGTCACTGTGAGCACAGTCAAAAAGTAGGAGAAACATCCTTTGTGCACGTTCCTGATTACTATTAAGGCCTATATTCAAATAAA

Function

NR:

description
type II basic cytokeratin

GO:

id name namespace
GO:0045095 keratin filament cellular_component

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09039154_09043792.mRNA True 3747 mRNA 0.41 10 9038823 9045639

Neighbor

gene id symbol gene type direction distance location
CI01000340_09015910_09020996 KRT4 coding downstream 17485 9014968 ~ 9021338 (-)
CI01000340_08986297_08992859 NA coding downstream 45964 8985772 ~ 8992859 (-)
CI01000340_08950990_08963235 OS9 coding downstream 74945 8949564 ~ 8963878 (-)
CI01000340_08943640_08947598 C1GALT1B coding downstream 90952 8942764 ~ 8947871 (-)
CI01000340_08928445_08929680 NA coding downstream 109143 8927589 ~ 8929680 (-)
CI01000340_09075161_09125493 SCN8AB coding upstream 29429 9075068 ~ 9126162 (-)
CI01000340_09141937_09145844 ATF1 coding upstream 95346 9140985 ~ 9146281 (-)
CI01000340_09150825_09173139 DIP2BB, DIP2B, DIP2BA coding upstream 104655 9150294 ~ 9173139 (-)
CI01000340_09186493_09193971 ATF7B coding upstream 140058 9185697 ~ 9194027 (-)
CI01000340_09207912_09220198 NA coding upstream 162273 9207912 ~ 9220198 (-)
G491764 NA non-coding downstream 1210 9037351 ~ 9037613 (-)
G491726 NA non-coding downstream 154560 8883828 ~ 8884263 (-)
G491725 NA non-coding downstream 155428 8882593 ~ 8883395 (-)
G491724 NA non-coding downstream 158159 8880393 ~ 8880664 (-)
G491658 NA non-coding downstream 232136 8803715 ~ 8806687 (-)
G491660 NA non-coding upstream 87524 9133163 ~ 9138105 (-)
G491831 NA non-coding upstream 415747 9461386 ~ 9461638 (-)
G491869 NA non-coding upstream 513676 9559315 ~ 9559524 (-)
G491882 NA non-coding upstream 539222 9584861 ~ 9699676 (-)
G491933 NA non-coding upstream 551992 9597631 ~ 9598101 (-)
G491712 NA other downstream 239246 8799201 ~ 8799577 (-)
G489511 NA other downstream 2711451 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 2818181 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 3713679 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 4379762 4598714 ~ 4627447 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 976253 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 1311545 10356758 ~ 10359856 (-)
G493109 NA other upstream 2628107 11673746 ~ 11677994 (-)
G493266 NA other upstream 3021538 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 3566577 12577435 ~ 12625758 (-)

Expression


Co-expression Network