CI01000340_09333908_09336663 (TSFM)


Basic Information

Item Value
gene id CI01000340_09333908_09336663
gene name TSFM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9333881 ~ 9336663 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09333908_09336663.mRNA
ATGGCTTTATATTCTTTATTTCGATCTGTCAGGTCTGAAGTAGTCAAGGGATGTCTCACGCAGCATGTTCAGTCTCTCTACACCAGCTGCCCGAGTTTAGCAGCGGATAAAGCACTTCTCTTGAAATTACGCAAATCTACGGGCTACACCTTCATCAACTGCAAAAAGGCACTGGAGAAATTCAACAATGACATTACACAGGCAGAAAGCTGGCTGCATGAACAAGCACAAAAGGAGGGCTGGAACAAAGCAAACAAACTGGAAGGTCGGAAAGCCAAGGAGGGGCTGATTGGTCTCATTAAGGGTGGCAATGCAGCTGTCATGGTTGAGGTGAACTGCGAGACAGATTTTGTGGCAAGGAATGAGAAATTTCAGCAGTTGGTGAAGGATGTTGCTTTGTCAATAATGGCTCATCACTGCAGCAAAAAGCAGACAGGGTATTTTAAGAGTGAGCTGTCTTCTGAGGACATTTCAAAGCTCCACATTCCTGACGGACCCTCACTGGCAGATCAGGTAGCCTTGACTATAGGGCGATTAGGTGAGAACATTGGCATGCGGCGGGCCGTATCACTTGTAGTGCCCTCTGATTGGCATATTGGCTCATATGTTCATGGGATGGTTCCTGGGCAGGTTGGCATTGATATGGGGCGCTATGGATCACTAGTTGTTTTTCAAGGTGGACCTAAGGAAGGGACAGACACTCTGGGAAGGAAGCTGGGGCAACATATAGTGGGTGAAGCACCTGTTTCTCTTGGCAACATGGACGATATACCATGCGGTGAATCTGAGACGAGACTTTTGCCCCAGACCTTCCTCCCAGATCCCAAATACACCGTGGGACAGTACCTGATTTCACAGGATGCACGTGTGCTAGACTTCATACGTTACAAGTGTGGAGAGAGTCAAGAGGAGTGAGCAGAGCCATTTGAATGAGAAAATAAA

Function

symbol description
tsfm Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 3. Orthologous to human TSFM (Ts translation elongation factor, mitochondrial).

GO:

id name namespace
GO:0070125 mitochondrial translational elongation biological_process

KEGG:

id description
K02357 tsf, TSFM; elongation factor Ts

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09333908_09336663.mRNA True 942 mRNA 0.47 6 9333881 9336663

Neighbor

gene id symbol gene type direction distance location
CI01000340_09326254_09329458 MYL6, MYL6B coding downstream 4423 9325950 ~ 9329458 (-)
CI01000340_09252097_09270719 PFKMB coding downstream 63162 9251827 ~ 9270719 (-)
CI01000340_09235680_09248928 NA coding downstream 84953 9235625 ~ 9248928 (-)
CI01000340_09221348_09234885 ESPL1 coding downstream 98996 9220931 ~ 9234885 (-)
CI01000340_09207912_09220198 NA coding downstream 113683 9207912 ~ 9220198 (-)
CI01000340_09344723_09348813 NA coding upstream 7991 9344654 ~ 9348813 (-)
CI01000340_09395876_09401598 F264, PFKFB4B, PFKFB4, PFKFB4A coding upstream 58651 9395314 ~ 9403040 (-)
CI01000340_09407475_09411603 NA coding upstream 70064 9406727 ~ 9411603 (-)
CI01000340_09414656_09416577 NA coding upstream 77993 9414656 ~ 9416977 (-)
CI01000340_09418240_09424587 UROC1 coding upstream 81097 9417760 ~ 9424587 (-)
G491660 NA non-coding downstream 195776 9133163 ~ 9138105 (-)
G491764 NA non-coding downstream 296268 9037351 ~ 9037613 (-)
G491726 NA non-coding downstream 449618 8883828 ~ 8884263 (-)
G491725 NA non-coding downstream 450486 8882593 ~ 8883395 (-)
G491724 NA non-coding downstream 453217 8880393 ~ 8880664 (-)
G491831 NA non-coding upstream 124723 9461386 ~ 9461638 (-)
G491869 NA non-coding upstream 222652 9559315 ~ 9559524 (-)
G491882 NA non-coding upstream 248198 9584861 ~ 9699676 (-)
G491933 NA non-coding upstream 260968 9597631 ~ 9598101 (-)
G491875 NA non-coding upstream 269314 9605977 ~ 9607644 (-)
G491712 NA other downstream 534304 8799201 ~ 8799577 (-)
G489511 NA other downstream 3006509 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3113239 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4008737 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 4674820 4598714 ~ 4627447 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 685229 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 1020521 10356758 ~ 10359856 (-)
G493109 NA other upstream 2337083 11673746 ~ 11677994 (-)
G493266 NA other upstream 2730514 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 3275553 12577435 ~ 12625758 (-)

Expression


Co-expression Network