CI01000340_09428701_09432767 (SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1)


Basic Information

Item Value
gene id CI01000340_09428701_09432767
gene name SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9427666 ~ 9432767 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09428701_09432767.mRNA
CTCTCTCGCTTCTGTCTTTCTCTCTTACCCGGGCGGCGGAGCGCACCGGCAGCGCTGGACTATCCGTTTGCAGCTCACTGGGACTTAAGATCGTGACCGTGATTTCAGGGCACCGTCACCATGGCGAAAGATATTTAACGGCAAATATTGCCACAACAACTTATTCAGAGTTTTGTTGGATTGCCAAACCAGAGGGAAGCGTTAAGTTCTTGGAGGTAATAAAACCATTTTGTGCGGTTTTACCGGAAATCCAGAAACCAGAAAGAAAGATCCAGTTCCGAGAAAAGGTGCTATGGACCGCCATCACATTGTTCATCTTTCTTGTTTGCTGCCAGATCCCGCTGTTTGGGATCATGTCTTCAGACTCAGCAGATCCATTCTACTGGATGAGAGTCATCTTGGCCTCCAACAGAGGTACTTTGATGGAGTTGGGTATCTCTCCCATTGTGACCTCTGGTCTGATCATGCAGCTGCTGGCTGGAGCTAAAATCATTGAGGTTGGAGACACACCTAAAGACAGAGCACTCTTCAATGGAGCTCAGAAACTGTTTGGTATGATCATCACCATTGGCCAGGCTATTGTGTACGTCATGACTGGAATGTATGGAGACCCTTCAGAGATGGGTGCTGGCATCTGTCTGCTGATCATCATTCAGTTGTTTGTGGCCGGTCTGATCGTGTTGCTGCTGGATGAGTTGCTGCAGAAAGGTTACGGTTTGGGCTCTGGTATCTCACTCTTCATCGCCACAAACATCTGTGAGACAATCGTATGGAAGGCATTCAGCCCAACCACAGTCAACACAGGCAGAGGCACTGAGTTTGAAGGAGCCATTATTGCACTGTTCCACCTGCTGGCCACTCGTACTGATAAAGTACGTGCTCTGAGAGAGGCCTTTTACAGACAGAACCTGCCTAACCTCATGAACCTCATTGCAACAGTCTTTGTCTTTGCGGTTGTCATATACTTCCAGGGCTTCAGAGTCGACCTGCCCATCAAGTCTGCACGTTACCGTGGCCAGTACAACACATATCCCATCAAGCTGTTCTACACCTCCAATATTCCCATCATCCTGCAGTCTGCTCTGGTTTCTAACCTTTACGTTATCTCTCAGATGCTCTCCACCCGCTTTAGCGGCAACTTCCTGGTCAACCTCTTGGGAACTTGGTCTTCATTTGGTTCTGTGCTTGATGACCCAGTCCATGCAGTGATCTACATTATATTCATGCTGGGATCCTGTGCCTTCTTTTCTAAGACCTGGATTGAAGTTTCTGGATCATCTGCCAAAGATGTGGCCAAGCAGCTGAAAGAACAGCAGATGGTAATGAGGGGACACAGAGAGACCTCCATGGTTCATGAACTCAACAGGTACATCCCCACAGCTGCTGCATTTGGTGGACTATGTATCGGAGGCCTTTCGGTAATGGCTGACTTCCTGGGTGCCATCGGCTCTGGAACAGGAATCCTATTGGCTGTTACCATCATCTATCAGTACTTTGAGATATTTGTTAAGGAACAGAGTGAAGTCGGCAGCATGGGAGCGCTACTCTTCTAAACAATGACATTCACAAATCGCACACATATTTGCTGACATCTTACAAAACACTTTTATTATTTTATGATTGTTGTTGTCATTTTATTTTTATTTTGGTGTGATTTGAGCATCCAAAATGGTCTGTCACGAGTGCTGTTTTGGGAGAACGTGTTCTTAGGCTTTAGTTTAGGCCGAGTGTGTTCTCTTATTTGTCAGGAGTGGCAAAGCGTTTCTAAAATTCAGTGATGAAACTGAACTTCATGGACGGGACAGTAAAGATGGACTCTGTGAGCTCTGACTAGGAATATTCAGAAATGTTCCCTTTTCCTCAGTCTGTCCTTCCTCTCTCCATGTATCCCTTCATTCGCCCTTTTCTTTATTTTCTGTCTGAACCTAGTTATGCCTGGTAAAAGGATTTTCCAGAAAGTATTGCTAATGTTGGGTGAGTGATTTACTCAACACTGCCAATTTTGTTTCCACACACAAACTATCTGTTACGTCTGTTTGTCAGTCATATCGGTCTTGTATGCGAAGCTAACAGGCATTTTTTTGTCCATAATAGCTATTGTTTAGTGTAAGGCTCTTTATAACTCCTCGTACCATAATTAATCATAAATTGTGATGGTTAGTTATGACTAGAGATCTGAGAACCAAACAGGTGCTTGGTTTTCAGTCAGCAGAATAGTTTGTCAATTCTAAACAAGGCAGCATCACAACCAAGGAAATGCAATACACAGTGTGGCACCAATGGTGTTTTTTTTTTGTTTTGTTTTTTTTGTTTTGTGTGTGTGTACTCATTAACGCTGGAATCCTTTTGTTCAGAATACATCACTGAGAGCTTCATTGGCAGACAACTGGTTACACCTATAGTCTGTTTAATTCCAAAATTAAGCCCATTTTACTGTATCATTGGGTGTCTGTATATATGACATTTAATGCAGTGTGCAACAATGTAAAATAGACCCATTTTCTGTTTTTATTTTTTTTCCCTTTTGGACTGTAAAAAGAAATGTTCCGAACAAATATGTTCAGCAAAGACTGATCATTCTCAATAAA

Function

symbol description
sec61a1 Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Involved in pronephric nephron development. Acts upstream of or within habenula development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including axis; digestive system; hatching gland; midbrain hindbrain boundary; and polster. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).
sec61a1l Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Acts upstream of or within pronephros development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including EVL; anterior axial hypoblast; axis; ectoderm; and mesoderm. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).

GO:

id name namespace
GO:0005829 cytosol cellular_component

KEGG:

id description
K10956 SEC61A; protein transport protein SEC61 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09428701_09432767.mRNA True 2588 mRNA 0.44 13 9427666 9432767

Neighbor

gene id symbol gene type direction distance location
CI01000340_09425880_09426992 NA coding downstream 674 9425671 ~ 9426992 (-)
CI01000340_09418240_09424587 UROC1 coding downstream 3079 9417760 ~ 9424587 (-)
CI01000340_09414656_09416577 NA coding downstream 10689 9414656 ~ 9416977 (-)
CI01000340_09407475_09411603 NA coding downstream 16063 9406727 ~ 9411603 (-)
CI01000340_09395876_09401598 F264, PFKFB4B, PFKFB4, PFKFB4A coding downstream 24626 9395314 ~ 9403040 (-)
CI01000340_09439272_09443734 IP6K2B, IP6K2 coding upstream 5614 9438381 ~ 9443734 (-)
CI01000340_09489742_09491331 NA coding upstream 54447 9487214 ~ 9491540 (-)
CI01000340_09499658_09526119 COL7A1 coding upstream 66490 9499257 ~ 9526119 (-)
CI01000340_09569243_09577176 TTLL3 coding upstream 135460 9568227 ~ 9577176 (-)
CI01000340_09621058_09623347 NA coding upstream 188248 9621015 ~ 9623366 (-)
G491660 NA non-coding downstream 289561 9133163 ~ 9138105 (-)
G491764 NA non-coding downstream 390053 9037351 ~ 9037613 (-)
G491726 NA non-coding downstream 543403 8883828 ~ 8884263 (-)
G491725 NA non-coding downstream 544271 8882593 ~ 8883395 (-)
G491724 NA non-coding downstream 547002 8880393 ~ 8880664 (-)
G491831 NA non-coding upstream 28619 9461386 ~ 9461638 (-)
G491869 NA non-coding upstream 126548 9559315 ~ 9559524 (-)
G491882 NA non-coding upstream 152094 9584861 ~ 9699676 (-)
G491933 NA non-coding upstream 164864 9597631 ~ 9598101 (-)
G491875 NA non-coding upstream 173210 9605977 ~ 9607644 (-)
G491712 NA other downstream 628089 8799201 ~ 8799577 (-)
G489511 NA other downstream 3100294 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3207024 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4102522 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 4768605 4598714 ~ 4627447 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 589125 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 924417 10356758 ~ 10359856 (-)
G493109 NA other upstream 2240979 11673746 ~ 11677994 (-)
G493266 NA other upstream 2634410 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 3179449 12577435 ~ 12625758 (-)

Expression


Co-expression Network