CI01000340_09621058_09623347


Basic Information

Item Value
gene id CI01000340_09621058_09623347
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9621015 ~ 9623366 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09621058_09623347.mRNA
ATAAAATTGTCAAGAAAAAATGACAGATGATTTAACCAAAGCTAAAGTTCTCTTCATTTTTCCTGTTCTAATGATTGTGAAGTGTTTCATTCTGCTTTGTGTTTTTCACCATCTTTTTCTTGTATGTTTTTATGCATGCTATGAACACTGTAGTCAGGAAGGTTCAAGTGCAGAAGCAGAGCTAAGTGTAAGTGCAAACAGCATCGGAATCACTGATTTGACTCAGGATGGAGATGTTCTGACGTTTGCCATCACGTCCCAGAAATTGAACGGAAGTGCCGGGGTGTGCGTGTTTCGAACATACGAGGACTTTGATTGGCTTCAACAGAGTCTTTTCTCACAAGAAAATGTTCCTGGACTTCAGGGAATTATATTTCCGCCTTTGCCCCCTAAAGCATTTCCATCCCAGCTGAACATGCAGACCAAAGCATTCAAACAACTTGGGTTCCTGGCTCTAGGGCAGGATTGGCAGAGTTATTGTAAGGCTTTGGAGTTTTATCTCCAGCAGGTGGCAACACACCCAACTCTCTGCAAGTGCAAAGCACTGGACAGCTTTCTTATTAACTCTGAGGTATAAACACACACACACATACACAAAGTGACTGTGATTTTTCATTAAA

Function

NR:

description
sorting nexin 32, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09621058_09623347.mRNA True 620 mRNA 0.41 5 9621015 9623366

Neighbor

gene id symbol gene type direction distance location
CI01000340_09569243_09577176 TTLL3 coding downstream 43839 9568227 ~ 9577176 (-)
CI01000340_09499658_09526119 COL7A1 coding downstream 94896 9499257 ~ 9526119 (-)
CI01000340_09489742_09491331 NA coding downstream 129475 9487214 ~ 9491540 (-)
CI01000340_09439272_09443734 IP6K2B, IP6K2 coding downstream 177281 9438381 ~ 9443734 (-)
CI01000340_09428701_09432767 SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1 coding downstream 188248 9427666 ~ 9432767 (-)
CI01000340_09623654_09628766 CCDC174 coding upstream 154 9623520 ~ 9628766 (-)
CI01000340_09632037_09635287 TATDN2 coding upstream 8109 9631475 ~ 9635580 (-)
CI01000340_09637047_09638688 VHL coding upstream 13328 9636694 ~ 9638688 (-)
CI01000340_09640461_09646025 CRBN coding upstream 16450 9639816 ~ 9646025 (-)
CI01000340_09702982_09703952 TSPO coding upstream 79603 9702969 ~ 9704760 (-)
G491875 NA non-coding downstream 13371 9605977 ~ 9607644 (-)
G491933 NA non-coding downstream 22914 9597631 ~ 9598101 (-)
G491869 NA non-coding downstream 61491 9559315 ~ 9559524 (-)
G491831 NA non-coding downstream 159377 9461386 ~ 9461638 (-)
G491660 NA non-coding downstream 482910 9133163 ~ 9138105 (-)
G491938 NA non-coding upstream 1518 9624884 ~ 9625228 (-)
G491946 NA non-coding upstream 68242 9691608 ~ 9693371 (-)
G491970 NA non-coding upstream 142069 9765435 ~ 9766574 (-)
G491978 NA non-coding upstream 231540 9854906 ~ 9855304 (-)
G491980 NA non-coding upstream 234905 9858271 ~ 9858545 (-)
G491712 NA other downstream 821438 8799201 ~ 8799577 (-)
G489511 NA other downstream 3293643 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3400373 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4295871 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 4961954 4598714 ~ 4627447 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 398526 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 733818 10356758 ~ 10359856 (-)
G493109 NA other upstream 2050380 11673746 ~ 11677994 (-)
G493266 NA other upstream 2443811 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2988850 12577435 ~ 12625758 (-)

Expression


Co-expression Network