CI01000340_09649643_09655912


Basic Information

Item Value
gene id CI01000340_09649643_09655912
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9649643 ~ 9655912 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09649643_09655912.mRNA
ATGGACAAATTCATGGAATATCCCAAAAGTGGTAATATGCTCATTATACTCCACATATTGCCTGCTCTTTGGGTGTCTGTTGTTAAGGAAGAGTTTCAGGAGCACCCCCTGGACCCCAGAGAACACTTCCAGGCTGAGCCTCTCTTCAAGATGCAACAACAACCACCTATTCCTGAAGAGTACTGTGATAATCAAGAACTCAAACCAAAGATTGAATCCAAACCTAGAAGATATCTACAGCATCATCTCAGTTCAAACTTCAATATGTACTTGCCGCTCCACACTAACAAATGCCTAAGGCCTCCAAATTCAAAAGAGCATATGACAGAAATGCATAGAAAAATAGTACTGAAGCAGGAGGGGTCACAAGAGAGGAAGACAGAAAAAATTATATGTATGGAAAGGACAGTACAAACAGATGAGACGGAACCGGATGTTATTCTGGAACAGGGGGATGACTTAGGATGCGGTGATGAGTTAGCACAGGGAATAGATTTAGATCTGGTGGAGGGTTTAGAAGAAAGTGAGACATCTAAGTCAGAGGATGAGGAAGAGTCAATGGACCTTCTGTCTGATTCATGCAGTAAAAAAGAGGTGGATGATAATGTAGTAGCAGAGCAGATACAAGTAGAGGATGTAGGGAAGATAGCATGGGGACTGACTAAAAATGGTGTATTAACTTCACATGAAAGTTCTAGTGATGTTCAAATGGCTTCTAATACAGTTTATGGCTGCATAACACACAGAGACAGAGTACTATATGACAAAATTTGCACCAGTAAAACTTTCATTGAAGAATTGTACCCAGATGGCATAATCCCTGGCAGAATGTTTTCAAGTGAAGAAGACATAGATGGGTTGTTCCCAGATATTTGTGATGCAGGCGAGGCGTTAGCAGACAAAGATGGACTTTCTGAGTGTGATCTCTTTGAACAAACAGAACCTCTTCAAATGACAGAAACAGAGGACAATGTCAGTGGAGATATTATGATGCTTATCACTGAGGATGGATCGAACAGCTCAGATTTGTCTTCAACTTCCATTGAGGAAGAGGATGATGAAATGCAGGTGGAAAAAGAGAAAATGGAGGAAAAAGGAAACAATTATTTGTCAGACAAAAGTGCTTCTCAGGATCTCTCAGCTATTGACTCTCTAGACTGTCCCTCATCAAACAATGGAGGTGAAACTCTCCTCGAATCCGATCAGACTTCTTTTTCAAATTCTTCTTCTTCTTCTCAGCCATTTATTGTTTCAGGCTCTGAAACTGTCTCAGATGATGATGTAGCAGATGCAAATCACAACTTCTGTAGCAAATATGTGGCTGATCATGATGATGCCATGTCTGCTTCATTAAATTTTGATGTCATGAGCGCCCTTTCGCTTGTTCAACAGCAACCTGAAACCCAAGGCCAAAGTTTACAACATAATCAGGATGAAGAGAGCATTGGAGAAGAAAAAGGAGGAGTTGCAAGTGACCACTTGAGTATATCTGAAGGAAAAGGACTCACAGTAGATCATGTGTATGAAGAGACAGAGCCAAAAGTTCAAGCCAAAGACTTCCTTCAGAACAGGAAGTACTTTATGACTCGCTCTATATCTGTGGAAACCCCCAGTAAGAGAGTTGACCTAATGACTAGCCCTGCACCAGGAAATGGGCGACTTTTGCTACACCCACGCTCATTCTATACAGATCAGTGTTTCCTTGGAGATAGTAGACCTGCGCTGACTGGTTCATTAGGATGTCTTTCACAGGGCACCTCAAACTTAGCTAAAGTTACAAGAGTGGATATTCCACCGCCTTTTGAACTGGCATCCATCACAAAGCGACCAATCAGAAAAAGTTCTCCATCCCTCCCAAACGAAATCTCCGCTTCTTGCAAGAAGCCTGATTTTGGGTTTAAACGATATCTTCTGCCTTTACGATTCCTTAGGAAATCAGATCGGAAAAGTGTGATGGATAATCGCTCAATCTCCTCGAGGTCTTCGTCCGAGTCAAGTCCACAAGCGTCATGTAAACGCTTGGATTTTATCAGGCATAACATGGGCAGCCTGGATTTGCAGAGCACTCCAGATTGCACACCACCTGTGTCTCCTTCTTCCTTTCTCTTCCAAAAGAATAGACAAAAACAGGGACTAAACTTCACTCTTAATAATGATTTGACTTCTAGCACCATTTCTATTGAGCCAGGCTCTCTCTTTGAGCCCCTTCCCCTTTTCAAACCTCGATCTTTTTCATCTCCCAATACCGACTCATCGGAATATGAGAACGTTCAAAACGCTGCTTCTCACTATGAGAATGTGCAGATTCGTCTCCTGAATCCCGTCATTCAGAGTCAACGAAATCAGAGTTCATCCAATGATACTGATGGCTATGTGGATATGAGCAGTCTGCCAGGCTTCCAGAGCAAAAGTCAGTCATCTGAGCAAGAGACCGATAGCCTCTACACTTTCTGTTCTCCTAATGTGAGGACAGATGGAACAGTGGGTGTGTCTGTGGGTGTGGCTTGTACACAAGAGAAAAAGACAAAGGCATCTGAAAAACTGTCAGTTGAAGCTGATGAGAGGCTGATGACAGTGTGGACAGAGGTACCTGATATTTGTACTCTCCACCAAAATATCCACACATTACTGGAGACCCGCTTAAAAGAATGGGATCAGAATGAAGGTATTGCTGAAATCATCCTGGCAAAGAAGAAAGAGTTTTCCATTTTCTCTTCCTACATCAGTCATTATGATGAAAAATTGAATTATCTGGAACACATACAAAGCACACTACTAGATGCAGTGACCCTGAAAAAGCAGTTGCTGCAGGTCATTGTGCGCATCCTACAGTACCGTATGCTACTAACAGACTACCTGAATAACCTCTCACCAGACTCCCGAGAGTTTGAAAATACACAAG

Function

NR:

description
FYVE, RhoGEF and PH domain-containing protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09649643_09655912.mRNA True 2902 mRNA 0.42 7 9649643 9655912

Neighbor

gene id symbol gene type direction distance location
CI01000340_09645797_09647452 NA coding upstream 2092 9645797 ~ 9647551 (+)
CI01000340_09630528_09631067 NA coding upstream 18280 9630528 ~ 9631363 (+)
CI01000340_09611318_09614740 NA coding upstream 34903 9611318 ~ 9614740 (+)
CI01000340_09589824_09608037 SLC4A10, SLC4A8 coding upstream 41038 9589824 ~ 9608605 (+)
CI01000340_09364385_09394079 ITPR1A coding upstream 255118 9364385 ~ 9394525 (+)
CI01000340_09656584_09660334 NA coding downstream 672 9656584 ~ 9660560 (+)
CI01000340_09674645_09681913 PRKCDA coding downstream 18733 9674645 ~ 9682677 (+)
CI01000340_09684020_09686723 DDI2 coding downstream 27587 9683499 ~ 9686753 (+)
CI01000340_09688037_09689981 NA coding downstream 32125 9688037 ~ 9690246 (+)
CI01000340_09691816_09701552 CF125, UQCC2 coding downstream 35863 9691775 ~ 9701597 (+)
G491032 NA non-coding upstream 24425 9624858 ~ 9625218 (+)
G491031 NA non-coding upstream 26602 9620240 ~ 9623041 (+)
G491023 NA non-coding upstream 73361 9576072 ~ 9576282 (+)
G491022 NA non-coding upstream 74675 9574731 ~ 9574968 (+)
G491021 NA non-coding upstream 75161 9574250 ~ 9574482 (+)
G491052 NA non-coding downstream 76446 9732358 ~ 9733035 (+)
G490914 NA non-coding downstream 85756 9741668 ~ 9742721 (+)
G490857 NA non-coding downstream 194623 9850535 ~ 9851679 (+)
G491067 NA non-coding downstream 206079 9861991 ~ 9862216 (+)
G491075 NA non-coding downstream 243996 9899908 ~ 9900145 (+)
G490839 NA other upstream 412084 9234973 ~ 9237559 (+)
G490826 NA other upstream 518246 9125184 ~ 9131397 (+)
G490645 NA other upstream 606542 9038812 ~ 9043101 (+)
G489634 NA other upstream 2948855 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 4984458 4659584 ~ 4669322 (+)
G490896 NA other downstream 175561 9831473 ~ 9845052 (+)
G492194 NA other downstream 995771 10651683 ~ 10652694 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other downstream 1127490 10781468 ~ 10787792 (+)
G492847 NA other downstream 1953194 11609106 ~ 11696961 (+)
G493617 NA other downstream 3399480 13055392 ~ 13069652 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032222 CU463231.2 non-coding NC_007117.7 CM002890.2 40475711 ~ 40481777 (+)