XLOC_013571


Basic Information

Item Value
gene id XLOC_013571
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40364311 ~ 40452290 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026702
AATGTCTAAACCTGTGGTTCCTCTTGTACTAAGGATTACAACTGCAGCAACATGGACATCATTAAGTCTCTTACAGTGTCTGTCCACAACGTCTAAAGGGATGTTGTCCTCAGGAAAGCTCACAGCATCCAGACGGGACGCCACCAGCAGGAGTATCAGCAGGTCAATCGTCAGTTCTCGCCACCCCATCGCTGGCACAGAGGGCAAACACCTCCTGTACTGCACTTATGTAAATGTTacctgcaacacacacaaacacatacacgcaTTAAATAATATAACTATAACTAAACACCTCCCagttgtgtttttgtgcatgaCCTCTGTCAGAATTTGCTTTGTAGATTAGAACTCCTGTGTTTTTTGCATGTACATGAGCAGGTTCACTCCTGACAGACCATTtagcgtgtgtgtgagtgagtgtgtgcgcATTTGGGAGCCAATACCCATGATTGAAAATCTGTCCGTGAGAGAAAGGTCAAAAAACAGACAGAGAGGGGGTAGAGAGCATGCGCTTGAGACACTAAAGTCAACGATGTGCTATCAGCAAGCTCCTTCACACATGCACACTGTATTTTAGGATGTCATTTAGGGTGTACTTCTGTGTGCG
>TCONS_00027394
GGGTTATTATGCCATGCAGTTTTGAAATACCAAATCTATGGGATTTACATCTGGATTCATTCTGACAATTCTAGTTTACAGATGACTGGAGACAACTGCATGggGGATTCTGACTTAAAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTTGCTCTTCATCCAAACATGTGCACTAAATGTCTAAACCTGTGGTTCCTCTTGTACTAAGGATTACAACTGCAGCAACATGGACATCATTAAGGTCAAACGGTCAAAGATCTCCATTCCACTTCCTGTTAAAATGCTGACTTACCTGCCCGCGATGAACAGCGTATCATGTATCTGGGTCATCAGCTGAAAGTCCAGTCTGTGCTGAGATTCGTTACCAGAGGGACGTCCACGAAACACCGGGAAATTATAGGAGGTGTCTTCTATAAATCATGGAAACAAAAGTCTCTTACAGTGTCTGTCCACAACGTCTAAAGGGATGTTGTCCTCAGGAAAGCTCACAGCATCCAGACGGGACGCCACCAGCAGGAGTATCAGCAGGTCAATCGTCAGTTCTCGCCACCCCATCGCTGGCACAGAGGGCAAACACCTCCTGTACTGCACTTATGTAAATGTTacctgcaacacacacaaacacatacacgcaTTAAATAATATAACTATAACTAAACACCTCCCagttgtgtttttgtgcatgaCCTCTGTCAGAATTTGCTTTGTAGATTAGAACTCCTGTGTTTTTTGCATGTACATGAGCAGGTTCACTCCTGACAGACCATTtagcgtgtgtgtgagtgagtgtgtgcgcATTTGGGAGCCAATACCCATGATTGAAAATCTGTCCGTGAGAGAAAGGTCAAAAAACAGACAGAGAGGGGGTAGAGAGCATGCGCTTGAGACACTAAAGTCAACGATGTGCTATCAGCAAGCTCCTTCACACATGCACACTGTATTTTAGGATGTCATTTAGGGTGTACTTCTGTGTGCG
>TCONS_00027395
TTCAGCTCATGCCTTTTTTTGTATTTCGGCCAGTCTTACCTTTGAGGGTTATTATGCCATGCAGTTTTGAAATACCAAATCTATGGGATTTACATCTGGATTCATTCTGACAATTCTAGTTTACAGATGACTGGAGACAACTGCATGtccgccgatgtacatggcaagctacttggcaaactggtaacagcagaaaagcagtccacacggagggGGATTCTGACTTAAAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTTGCTCTTCATCCAAACATGTGCACTAAATGTCTAAACCTGTGGTTCCTCTTGTACTAAGGATTACAACTGCAGCAACATGGACATCATTAAGGTCAAACGGTCAAAGATCTCCATTCCACTTCCTGTTAAAATGCTGACTTACCTGCCCGCGATGAACAGCGTATCATGTATCTGGGTCATCAGCTGAAAGTCCAGTCTGTGCTGAGATTCGTTACCAGAGGGACGTCCACGAAACACCGGTCTCTTACAGTGTCTGTCCACAACGTCTAAAGGGATGTTGTCCTCAGGAAAGCTCACAGCATCCAGACGGGACGCCACCAGCAGGAGTATCAGCAGGTCAATCGTCAGTTCTCGCCACCCCATCGCTGGCACAGAGGGCAAACACCTCCTGTACTGCACTTATGTAAATGTTacctgcaacacacacaaacacatacacgcaTTAAATAATATAACTATAACTAAACACCTCCCagttgtgtttttgtgcatgaCCTCTGTCAGAATTTGCTTTGTAGATTAGAACTCCTGTGTTTTTTGCATGTACATGAGCAGGTTCACTCCTGACAGACCATTtagcgtgtgtgtgagtgagtgtgtgcgcATTTGGGAGCCAATACCCATGATTGAAAATCTGTCCGTGAGAGAAAGGTCAAAAAACAGACAGAGAGGGGGTAGAGAGCATGCGCTTGAGACACTAAAGTCAACGATGTGCTATCAGCAAGCTCCTTCACACATGCACACTGTATTTTAGGATGTCATTTAGGGTGTACTTCTGTGTGCG
>TCONS_00027396
TCATTCTGACAATTCTAGTTTACAGATGACTGGAGACAACTGCATGggGGATTCTGACTTAAAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTTGCTCTTCATCCAAACATGTGCACTAAATGTCTAAACCTGTGGTTCCTCTTGTACTAAGGATTACAACTGCAGCAACATGGACATCATTAAGttttttttgtcCAGATTTATTGGGATGCACATGTGACATCACACCGTACTAACTCTCAAGTTGTGCCGTTCCTGTCTGTATACTAAAATCGCTTGGCATGAGGATGTTCATGTGgcatctgatttatgcacaacATCAATCCTGGCTCTTATTGGAG

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0048747 muscle fiber development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026702 False 610 lncRNA 0.45 2 40364311 40397078
TCONS_00027394 False 979 lncRNA 0.44 5 40364311 40452245
TCONS_00027395 False 1047 lncRNA 0.45 5 40364311 40452290
TCONS_00027396 True 345 lncRNA 0.41 3 40373724 40452189

Neighbor

gene id symbol gene type direction distance location
XLOC_013570 NA coding downstream 505203 39854487 ~ 39859108 (-)
XLOC_013569 NA coding downstream 567476 39791715 ~ 39796835 (-)
XLOC_013568 dmxl2 coding downstream 577271 39669255 ~ 39787040 (-)
XLOC_013567 cyp19a1a coding downstream 727963 39620535 ~ 39636348 (-)
XLOC_013566 BX908722.1 coding downstream 748406 39615775 ~ 39615905 (-)
XLOC_013572 zgc:101040 coding upstream 27394 40479684 ~ 40481028 (-)
XLOC_013573 chrna5 coding upstream 34167 40486457 ~ 40509006 (-)
XLOC_013574 NA coding upstream 60740 40513030 ~ 40515079 (-)
XLOC_013575 NA coding upstream 69202 40521492 ~ 40522524 (-)
XLOC_013576 si:ch211-132b12.7 coding upstream 216325 40668615 ~ 40684792 (-)
XLOC_013384 BX323829.1 misc downstream 20822080 19542102 ~ 19542231 (-)
XLOC_013565 BX908722.2 non-coding downstream 777646 39586546 ~ 39586665 (-)
XLOC_013562 NA non-coding downstream 974769 39382726 ~ 39389542 (-)
XLOC_013588 NA non-coding upstream 780024 41232314 ~ 41232928 (-)
XLOC_013589 NA non-coding upstream 891516 41343806 ~ 41344821 (-)
XLOC_013590 NA non-coding upstream 898699 41350989 ~ 41351483 (-)

Expression


Co-expression Network