XLOC_013573 (chrna5)


Basic Information

Item Value
gene id XLOC_013573
gene name chrna5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40486457 ~ 40509006 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026704
CGGTTGTATGTGTGTAAGCAGCCACACACATGCTGATTGGCATGGACACACGACAACCAAATGGAAAACAGACATTCTGAAGATTCCGCTCTCTTCCAGTCCATAATCCGATCTTCTCTGTGgttttgctgctgctgctgagggTATCATGGTAACAGCTCTCAGCTTGGTCAGAGCTCTCCTCCCGCTGGTCTGTTCTGCTGTCCTGTGCTCCGCTATAGGTCCTCCTATGCTGTCCTCCTATGCCAAGACTGAAGACAAGCTGTTTAAACATCTCTTCAGCAACTACCAGAAATgggtgagaccaatcgaagatctaAACACAACTATTCAAGTAAAGTTTGGCCTGGCAATTTCCCAGCTGGTGGATGTGGATGAGAAGAACCAGCTGATGACGACCAATGTGTGGATGAAGCAGGAATGGACAGACTTGAAGCTCAGATGGGATCCGGATCATTACCTGGGCATCACCTCTATCAGGGTGCCTTCAGACTCCATCTGGATTCCTGACATTGTGCTCTATGACAATGCAGATGGTAATTTCGAGGCCACAGTGACAAAAGCAGTGGTGAGATTTGATGGCACAATCTCCTGGACTCCTCCTGCCAACTATAAATCTGCCTGCACCATTGATGTGACCTTCTTCCCCTTTGACCTTCAAAACTGCTCCATGAAGTTCGGTTCTTGGACCTATGATGGCTCCCAgGTCGACATTCTCCTTGAAGACGTGCATGTGGACAAACGTGACTATTTTGACAATGGCGAATGGGAGATCGTGAAGGCCACTGGTAACCGGGGTTTGAGAAGAGATGGGActtttttctatccatccatcacgTACTCCTTTATAATCCGACGTCTTCCTCTCTTCTACACACTCTTCCTCATCATCCCCTGCATTGGATTGTCTTTCCTGACTGTGCTTGTCTTTTATCTTCCGTCTAATGGAGGGGAAAAAATCTCCCTCTGCACGTCTGTCCTCGTCTCACTTACTGTCTTCCTTCTGGTGATAGAAGAGATCATCCCTTCCTCCTCAAAGGTAATTCCTCTGATTGGAGAATATTTGGTCTTCACTATGATCTTCGTGACACTTTCCATTGTCATCACCGTCTTTGCTATTAACATCCACCATCGCTCCTCTTCCACCCATCATAGCATGGCTCCCTGGGTCCGCCGTATCTTTCTTCACCACTTGCCTAGACTGCTCTGCATGCGTAGCCACGTGGACCGTTACGCCACCAGCGCTGGGACTCGAACAGGAGGACTGGGCTATGGGAAGAGTTTGAGTCAGGATACCAACCAGCTCGATGCAGAACACAACCTGCAGGCGGCCTTAGAGTCTATACGCTACATCACACGCCATGTGGTGAAGGAGAATGAAGTCAGAGAGGTTGTTCAAGACTGGAAGTTTGTGGCCCAGGTTCTGGACCGGGTTTTCCTGTGGGCCTTTCTCTTAGTATCACTACTCGGCTCTGCTCTGCTTTTCATCCCTGTTATCTATAAATGGGCCAGCATCATTGTTCCCAGCTATGCTGAAATTACTAGCTAAACTACACGAATGTATACACTTCCAAACTTTTTGGCTTGAATAAAGTTTTTTGCATTATTATAGCATTTATTACTGTAGTCTTCAAAACATCTATGCAAATTGTGGCAATCATGCGCTGTCATTTAAGATGTAACATGCTGCATTCTATTCTCTGTTGTATGCTGATTTCATTATATTaaagtttacaataaaaatatgtattg
>TCONS_00026705
ggTATCATGGTAACAGCTCTCAGCTTGGTCAGAGCTCTCCTCCCGCTGGTCTGTTCTGCTGTCCTGTGCTCCGCTATAGGTCCTCCTATGCTGTCCTCCTATGCCAAGACTGAAGACAAGCTGTTTAAACATCTCTTCAGCAACTACCAGAAATgggtgagaccaatcgaagatctaAACACAACTATTCAAGTAAAGTTTGGCCTGGCAATTTCCCAGCTGGTGGATGTGGATGAGAAGAACCAGCTGATGACGACCAATGTGTGGATGAAGCAGGAATGGACAGACTTGAAGCTCAGATGGGATCCGGATCATTACCTGGGCATCACCTCTATCAGGGTGCCTTCAGACTCCATCTGGATTCCTGACATTGTGCTCTATGACAATGCAGATGGTAATTTCGAGGCCACAGTGACAAAAGCAGTGGTGAGATTTGATGGCACAATCTCCTGGACTCCTCCTGCCAACTATAAATCTGCCTGCACCATTGATGTGACCTTCTTCCCCTTTGACCTTCAAAACTGCTCCATGAAGTTCGGTTCTTGGACCTATGATGGCTCCCAgGTCGACATTCTCCTTGAAGACGTGCATGTGGACAAACGTGACTATTTTGACAATGGCGAATGGGAGATCGTGAAGGCCACTGGTAACCGGGGTTTGAGAAGAGATGGGActtttttctatccatccatcacgTACTCCTTTATAATCCGACGTCTTCCTCTCTTCTACACACTCTTCCTCATCATCCCCTGCATTGGATTGTCTTTCCTGACTGTGCTTGTCTTTTATCTTCCGTCTAATGGAGGGGAAAAAATCTCCCTCTGCACGTCTGTCCTCGTCTCACTTACTGTCTTCCTTCTGGTGATAGAAGAGATCATCCCTTCCTCCTCAAAGGTAATTCCTCTGATTGGAGAATATTTGGTCTTCACTATGATCTTCGTGACACTTTCCATTGTCATCACCGTCTTTGCTATTAACATCCACCATCGCTCCTCTTCCACCCATCATAGCATGGCTCCCTGGGTCCGCCGTATCTTTCTTCACCACTTGCCTAGACTGCTCTGCATGCGTAGCCACGTGGACCGTTACGCCACCAGCGCTGGGACTCGAACAGGAGGACTGGGCTATGGGAAGAGTTTGAGTCAGGATACCAACCAGCTCGATGCAGAACACAACCTGCAGGCGGCCTTAGAGTCTATACGCTACATCACACGCCATGTGGTGAAGGAGAATGAAGTCAGAGAGGTTGTTCAAGACTGGAAGTTTGTGGCCCAGGTTCTGGACCGGGTTTTCCTGTGGGCCTTTCTCTTAGTATCACTACTCGGCTCTGCTCTGCTTTTCATCCCTGTTATCTATAAATGGGCCAGCATCATTGTTCCCAGCTATGCTGAAATTACTAGCTAAACTACACGAATGTATACACTTCCAAACTTTTTG

Function

symbol description
chrna5 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in interpeduncular nucleus tegmentum and liver. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human CHRNA5 (cholinergic receptor nicotinic alpha 5 subunit).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0035094 response to nicotine biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-050417-440 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in interpeduncular nucleus tegmentum and liver. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human CHRNA5 (cholinergic receptor nicotinic alpha 5 subunit).

Ensembl:

ensembl_id ENSDARG00000003420

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026704 False 1752 mRNA 0.46 9 40486457 40509006
TCONS_00026705 True 1440 mRNA 0.48 8 40486627 40508528

Neighbor

gene id symbol gene type direction distance location
XLOC_013572 zgc:101040 coding downstream 5429 40479684 ~ 40481028 (-)
XLOC_013571 NA coding downstream 34167 40364311 ~ 40452290 (-)
XLOC_013570 NA coding downstream 627349 39854487 ~ 39859108 (-)
XLOC_013569 NA coding downstream 689622 39791715 ~ 39796835 (-)
XLOC_013568 dmxl2 coding downstream 699417 39669255 ~ 39787040 (-)
XLOC_013574 NA coding upstream 4024 40513030 ~ 40515079 (-)
XLOC_013575 NA coding upstream 12486 40521492 ~ 40522524 (-)
XLOC_013576 si:ch211-132b12.7 coding upstream 159609 40668615 ~ 40684792 (-)
XLOC_013577 cntd2 coding upstream 189544 40698550 ~ 40708537 (-)
XLOC_013578 akt2 coding upstream 202182 40711188 ~ 40753583 (-)
XLOC_013384 BX323829.1 misc downstream 20944226 19542102 ~ 19542231 (-)
XLOC_013566 BX908722.1 non-coding downstream 870552 39615775 ~ 39615905 (-)
XLOC_013565 BX908722.2 non-coding downstream 899792 39586546 ~ 39586665 (-)
XLOC_013588 NA non-coding upstream 723308 41232314 ~ 41232928 (-)
XLOC_013589 NA non-coding upstream 834800 41343806 ~ 41344821 (-)
XLOC_013590 NA non-coding upstream 841983 41350989 ~ 41351483 (-)

Expression


Co-expression Network