CI01000340_09994916_10004762


Basic Information

Item Value
gene id CI01000340_09994916_10004762
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9994916 ~ 10005153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09994916_10004762.mRNA
ATTGCAGATATGGGAATTCAGATGAAAGCTCTAATATTGGGTGCTGCAATGGCAGCCGTAGCTTGTACAACCATCATCGCTTTGATTCTCTCTCTTGCTAATCATCAGTCTTTGGATCAGCCATACTCAACACAGTATGGGATTGTGTTTGATGCCGGCTCGACTCATACGGCCCTCTTCCTGTACCAGTGGCTGGGGAACAAAGAGAACAACACTGGAATAGTCTCTCAGAAACAGAGCTGTGATGTGGATGCAGTAATACCAGAAGGAAAGCGGAAGGCTACACCTGTGTACCTTGGTGCCACTGCTGGCATGCGGCTTCTTAGATTACAGAACCAAAGTCTAGCAGACAGCATCCTCATAGAAGTCACCAAAACAATCCAAAGTTATCCATTTGATTTCCGAGGGGCCAGAATACTCTCTGGCATGGAGGAGGGGACTTATGGCTGGATCACCATCAACTACCTCTTGGAAAGATTTATCAAGCACAATTTTGAGGGCCTTTGGATCCACCCTAAAGCAGGAACGATCCTTGGAGCTCTAGATCTCGGTGGTGCATCAACACAAATCTCATTCATCCCAAAAGACCCAGTGAAAGTCCCAGATTCAGCTTCTAATCTCCAACTCTATGGGTACAAGTATGAGTTGTACACACACAGCTACTTGTGCTACGGCAAGGACCAGGCTTTGAAGAAACTTCAGGCATACCTTCACAAGAATGCTGGACCAACACAATTTATCAGTCACCCATGCTACCACAATGGATATATACTCAATGTCACTATGGCTGAACTTTACAACTCCCCTTGTGTGGTCAAACCAAACAATTTTACCCCCACGGCTATACTCACTTTCTCAGGAACGGGTAATTCATCCCTCTGTCTTTCTCTAATGGAGAACATTGTTAACCTCACCGACTGTGCCTTATCACCAGACTGTGGTTTGGATGGTGCCTATCAGCCTCCTGTCAATGGCGAATTCTTTGCTTTTTCAGCATACTTCTACACCTTTGACTTCCTTGGCCTTGCCCCAAAAGCTCCACTGACACGGGTTGTTTCCACTATTGAGACTCACTGCAACAAAAACTGGACCACTCTTACTGCTGAAAATCCAGGCATTAAGGCAAAATATCTGAAAGATTATTGTGCTTCTGCTCATTATATTACGACTATTCTGCTGAAAGGATACAAGTTCAATGACACCTGGGATCAAATCTCTTTTGAGAAACAGGTAGCAGACACAGATATTGGCTGGACATTGGGCTACATGCTGAACCTGACCAACATGATTCCCTCTGAACATTTCAGAGCGGTGACAGGGGTGCCACACAGTCAATGGGCGGCTCAGACGTTCTTCATCGTATTTGCCCTATTCCTCAGTCTACTTATTATAGGCATCTTGTTTGTCCATGATCCAAAGCACTAAGTTGTGTGTCACGAGTGACTGTGTATGTTTACATTAATATTTATCACTTATATTTCACATATGAAGATCAGCACACAACTCTTTTGACTACTCTTTGAGATGTTTTCTTCACAAAGACCTTACAAACAGTGAAATAATCTATACACTTTGACATTGATAACAAAAATGAGATATTTCTACAAAATATAGCTTTTTGTGAGTTTTAAGTTATTTAAAGTAGTGTCTTGTTTTGAAGGCTGACTAGTTATACTTCGATTTAGTCTGTGCAAACTAATAATTCAGTAAATTGTTAGAGATTTTTCATCATTTATAAACTCTGAATCGTAAGAGTATAGTTTTTTTTTATTTGTTTGTATTTATGTTTACCTCCACTCAGCACTTACAGTAGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09994916_10004762.mRNA True 1816 mRNA 0.42 9 9994916 10005153

Neighbor

gene id symbol gene type direction distance location
CI01000340_09948209_09955176 PATZ1 coding upstream 39467 9947770 ~ 9955449 (+)
CI01000340_09935375_09945285 EIF4ENIF1 coding upstream 49631 9935319 ~ 9945285 (+)
CI01000340_09905529_09906314 NA coding upstream 88397 9905529 ~ 9906519 (+)
CI01000340_09890498_09895948 RUVB1, RUVBL1.S, RUVBL1 coding upstream 98645 9890498 ~ 9896271 (+)
CI01000340_09867373_09873132 GATA2B coding upstream 121528 9865705 ~ 9873388 (+)
CI01000340_10038089_10047331 FKBP5 coding downstream 32880 10038033 ~ 10048382 (+)
CI01000340_10066847_10072213 SLC6A13L coding downstream 59936 10065089 ~ 10072300 (+)
CI01000340_10081602_10083643 NA coding downstream 76449 10081602 ~ 10083867 (+)
CI01000340_10085575_10089504 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding downstream 80164 10085317 ~ 10089792 (+)
CI01000340_10097098_10098784 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding downstream 91327 10096480 ~ 10099068 (+)
G490870 NA non-coding upstream 47958 9946190 ~ 9946958 (+)
G491079 NA non-coding upstream 65219 9929382 ~ 9929697 (+)
G491080 NA non-coding upstream 67649 9926814 ~ 9927267 (+)
G491075 NA non-coding upstream 94771 9899908 ~ 9900145 (+)
G490880 NA non-coding downstream 3150 10008303 ~ 10020235 (+)
G490875 NA non-coding downstream 16734 10021887 ~ 10028121 (+)
G490915 NA non-coding downstream 24085 10029238 ~ 10032325 (+)
G491108 NA non-coding downstream 111003 10116156 ~ 10119206 (+)
G492101 NA non-coding downstream 463047 10468200 ~ 10470924 (+)
G490896 NA other upstream 149864 9831473 ~ 9845052 (+)
G490839 NA other upstream 757357 9234973 ~ 9237559 (+)
G490826 NA other upstream 863519 9125184 ~ 9131397 (+)
G490645 NA other upstream 951815 9038812 ~ 9043101 (+)
G489634 NA other upstream 3294128 6694221 ~ 6700788 (+)
G492194 NA other downstream 646530 10651683 ~ 10652694 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other downstream 778249 10781468 ~ 10787792 (+)
G492847 NA other downstream 1603953 11609106 ~ 11696961 (+)
G493617 NA other downstream 3050239 13055392 ~ 13069652 (+)
G493740 NA other downstream 3510074 13515227 ~ 13517111 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032244 entpd8 coding NC_007117.7 CM002890.2 41038757 ~ 41060423 (+)
bowfin (Amia calva) AMCG00003272 NA coding CM030139.1 CM030139.1 16863943 ~ 16878132 (-)