CI01000340_10025958_10028902 (SRSF3)


Basic Information

Item Value
gene id CI01000340_10025958_10028902
gene name SRSF3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10025656 ~ 10029589 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10025958_10028902.mRNA
AAAATTGTGAACAGTCTATCAGTGTAAGTTAATGTTAAATTTTAAATTTAATCTTAAATCTGTTTAAAAGTTTTCAAAAACACTTACAAAAGCCAACTTTGTACCTCTTATGTCTTATCTCATGCATGTTTATATTTCAGACTAGACCGGTATTATGAAGTTTAACAGATATTGTAAAATGGAAAGTTCTTTTTTTGGCGACAAACTGTAAATACTCTTTTTCTTTTTTCTTTTTCAAACAAATGCTTCCACTGAAATGTATAGAAGTATTCTCTAAATGTAAGATGTATTAACTTTGGATTAAATGTAGCTATTAAAAATATGCTTTCCATTAAATCTAGTATCAATGTCATTTCATTGTGTGTGAGTCTAAGTAAATTATCAACATTTAATCAAAGCCAAACAAAAAGTGTGTGTGTGCTTCAGTCTGTATGTATATCTTTTTTTATGGAGAGTGAGAGGGAGGGTTCATGAGAGGCTAACCAGTCATCAGGAAGCAAAACAGAACAGAATGTGCAGTACTAATCTGGGCGGAAAAAAACATTCTGTGCCGTGTGTGGTAACAGACAAATTCACATTGTCTTGCATACAAATACACATGGAAAATAAGAATGAGGGAAATATATAGGCCTATTAGATTCTCAAAGGGATACTCTTTTTGTTTAGACATGACTTAAGTATACAGCAATGAATATAAATGACAAAACCCCAGAAGAGTTGGAGTATGAAAAGGGTGAGTTTTATTGCGTATTCATTGTATCGGCGCTAATATCTTATTTCTTGCAGTTTTTTAGGTGTGGAGTTAAGTTTGGGATTGGCGAAGACATGGGAGATCCTTCCCTAAGCCGTGACTGTCCACTGGATTGTAAGGTCTATGTTGGTAATTTGGGCAACAGTGGTAACAAAACTGAGTTGGAGAGAGCATTTGGCTATTATGGTCCACTGAGGAGCGTATGGGTGGCCAGAAATCCTCCCGGCTTTGCTTTCGTGGAGTTTGAGGACCCCAGAGATGCGGCTGATGCTGTGAGGGAGCTTGACGGAAGAACACTCTGTGGTTGTCGAGTGCGAGTTGAAATGTCCAGTGGGGAAAAACGGTCAAGGTATCGAGGACCACCCCCTTCTTGGAATCGCCGGCCACGTGACGATTATAGACGCCGCAGTCCACCCCCTAGACGCCGCGTAGTTATGGGCAGACTGATGAGCATAGGTGTGGAGACTGACAAAACTGGCATATTTTCATAAATTTGGCAGAGCTGTTTGAAACCTCCCCCTTGCTCTGCTTGCCCTGATCAGTTTTCAACAGTTGTATTGGTTAACCAATGCTTCGTCCCCCCTTACTGATGTCCTTTATTCTAAATGACTGCATTGAGTGATCAGGGATATTCATTAACTTAAGCTGTAGTCACGGATTCCCTGGGGTTTTTCCCTATTAATACGAATTTCCATATTTTCAATGCTTAAAAATATTTTTTTTTTTTTTTTTGTGGCTGGTTACATTATGATGATTGAAACCCCGAAATAGCCTTAAACAATTACTAAATAAA

Function

symbol description
srsf3 Enables RNA binding activity. Involved in mRNA export from nucleus and regulation of mRNA splicing, via spliceosome. Located in nuclear speck. Biomarker of bipolar disorder and ovary epithelial cancer.

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12892 SRSF3, SFRS3; serine/arginine-rich splicing factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10025958_10028902.mRNA False 1544 mRNA 0.38 5 10025656 10029589

Neighbor

gene id symbol gene type direction distance location
CI01000340_10005818_10020244 NA coding downstream 5412 10005692 ~ 10020244 (-)
CI01000340_09987410_09989834 NA coding downstream 34144 9987308 ~ 9991512 (-)
CI01000340_09985390_09986420 HDHD3 coding downstream 39236 9985175 ~ 9986420 (-)
CI01000340_09961043_09968792 SLC2A11A coding downstream 56671 9960995 ~ 9968985 (-)
CI01000340_09922690_09932467 NA coding downstream 92674 9922389 ~ 9932982 (-)
CI01000340_10051115_10063764 SLC6A13 coding upstream 20935 10050524 ~ 10064237 (-)
CI01000340_10117381_10122090 SYNPR coding upstream 87133 10116722 ~ 10122090 (-)
CI01000340_10258762_10264352 NA coding upstream 228964 10258553 ~ 10265625 (-)
CI01000340_10270796_10271185 NA coding upstream 240841 10270430 ~ 10271269 (-)
CI01000340_10357202_10357606 NA coding upstream 327169 10356758 ~ 10359856 (-)
G491993 NA non-coding downstream 65646 9959744 ~ 9960010 (-)
G491992 NA non-coding downstream 67275 9958146 ~ 9958381 (-)
CI01000340_09898618_09904814 RFT1 non-coding downstream 126719 9898618 ~ 9904814 (-)
G491983 NA non-coding downstream 158303 9867049 ~ 9867353 (-)
G491980 NA non-coding downstream 167111 9858271 ~ 9858545 (-)
G491915 NA non-coding upstream 2731 10032320 ~ 10034890 (-)
G492001 NA non-coding upstream 35940 10065529 ~ 10067185 (-)
G492000 NA non-coding upstream 42443 10072032 ~ 10073240 (-)
G492005 NA non-coding upstream 67083 10096672 ~ 10102409 (-)
G492017 NA non-coding upstream 95452 10125041 ~ 10125278 (-)
G491712 NA other downstream 1226079 8799201 ~ 8799577 (-)
G489511 NA other downstream 3698284 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3805014 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4700512 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 5366595 4598714 ~ 4627447 (-)
G493109 NA other upstream 1644157 11673746 ~ 11677994 (-)
G493266 NA other upstream 2037588 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2582627 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 4183759 14318365 ~ 14336258 (-)

Expression


Co-expression Network