Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000340_10085575_10089504 |
| gene name | OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 10085317 ~ 10089792 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| opn1mw1 | Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Located in photoreceptor outer segment. Is expressed in several structures, including endocrine system; heart; integument; photoreceptor cell; and visual system. |
| opn1mw4 | Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; gut; heart; integument; and visual system. |
| opn1mw2 | Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including green sensitive photoreceptor cell; heart; integument; testis; and visual system. |
| opn1mw3 | Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; gut; heart; integument; and visual system. |
| id | name | namespace |
|---|---|---|
| GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
| id | description |
|---|---|
| K04250 | RHO, OPN2; rhodopsin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000340_10085575_10089504.mRNA | True | 1986 | mRNA | 0.44 | 9 | 10085317 | 10089792 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_10081602_10083643 | NA | coding | upstream | 1450 | 10081602 ~ 10083867 (+) |
| CI01000340_10066847_10072213 | SLC6A13L | coding | upstream | 13017 | 10065089 ~ 10072300 (+) |
| CI01000340_10038089_10047331 | FKBP5 | coding | upstream | 36935 | 10038033 ~ 10048382 (+) |
| CI01000340_09994916_10004762 | NA | coding | upstream | 80164 | 9994916 ~ 10005153 (+) |
| CI01000340_09948209_09955176 | PATZ1 | coding | upstream | 129868 | 9947770 ~ 9955449 (+) |
| CI01000340_10097098_10098784 | OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 | coding | downstream | 6688 | 10096480 ~ 10099068 (+) |
| CI01000340_10103264_10104931 | OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 | coding | downstream | 12479 | 10102271 ~ 10105194 (+) |
| CI01000340_10137511_10221465 | CADPSB, CADPS | coding | downstream | 47719 | 10137511 ~ 10221465 (+) |
| CI01000340_10223734_10225662 | RSG1 | coding | downstream | 133942 | 10223734 ~ 10226212 (+) |
| CI01000340_10227896_10249819 | TWF2, WDR82P1, WDR82.L, WDR82.S, WDR82, SWD2 | coding | downstream | 138104 | 10227896 ~ 10250768 (+) |
| G490915 | NA | non-coding | upstream | 52992 | 10029238 ~ 10032325 (+) |
| G490875 | NA | non-coding | upstream | 57196 | 10021887 ~ 10028121 (+) |
| G490880 | NA | non-coding | upstream | 65082 | 10008303 ~ 10020235 (+) |
| G490870 | NA | non-coding | upstream | 138359 | 9946190 ~ 9946958 (+) |
| CI01000340_09935375_09945285 | EIF4ENIF1 | non-coding | upstream | 147717 | 9935319 ~ 9945285 (+) |
| G491108 | NA | non-coding | downstream | 26364 | 10116156 ~ 10119206 (+) |
| G492101 | NA | non-coding | downstream | 378408 | 10468200 ~ 10470924 (+) |
| G492136 | NA | non-coding | downstream | 386349 | 10476141 ~ 10476566 (+) |
| G492137 | NA | non-coding | downstream | 387665 | 10477457 ~ 10477664 (+) |
| G492139 | NA | non-coding | downstream | 388798 | 10478590 ~ 10478848 (+) |
| G490896 | NA | other | upstream | 240265 | 9831473 ~ 9845052 (+) |
| G490839 | NA | other | upstream | 847758 | 9234973 ~ 9237559 (+) |
| G490826 | NA | other | upstream | 953920 | 9125184 ~ 9131397 (+) |
| G490645 | NA | other | upstream | 1042216 | 9038812 ~ 9043101 (+) |
| G489634 | NA | other | upstream | 3384529 | 6694221 ~ 6700788 (+) |
| G492194 | NA | other | downstream | 561891 | 10651683 ~ 10652694 (+) |
| CI01000340_10781781_10785861 | CAMKVA, CAMKVB, CAMKV | other | downstream | 693610 | 10781468 ~ 10787792 (+) |
| G492847 | NA | other | downstream | 1519314 | 11609106 ~ 11696961 (+) |
| G493617 | NA | other | downstream | 2965600 | 13055392 ~ 13069652 (+) |
| G493740 | NA | other | downstream | 3425435 | 13515227 ~ 13517111 (+) |
