CI01000340_10103264_10104931 (OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2)


Basic Information

Item Value
gene id CI01000340_10103264_10104931
gene name OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10102271 ~ 10105194 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10103264_10104931.mRNA
GTTTAAAAAACGGACCGGCAATTTAAGCCTACTTACAATCACCATCGTGCGGGTTTTCGCAGCGTTCGTATCGTTTAGGCCAGTGGTTCCCAACCACGTTCCTGGAGGCCCCCCAGCACTGCACATTTTGCATGTCTCCTTAATCAAACACACCAGATTTAGGTCATCAGCTCATTGGTAGTGACTCAAAGACCTGAAATGGGTGTGTTAGACAAAGGAGACATGCAGAATGTGGTTGAAAACCACTGGTTTAGGCAACATTTAAGGGAACATTTCTCAGTGCTGGTTTTGGAGTGACTCTAGAAATAACTAAGACGAGCATGTATCCCATCACAGCATGCATTTTAGTCACATAAACATCTTATATGCTAGTTTTTAATACTGCAAATAATAGAGAGAGAGTGCAAATTTAAAACATTATCGGGGTGGGGGTTCAGTGTCGGGGGTACGTGCGTAGACCCAACCCAAGCCCCGTCCTAGCGCCGCCACTGCCCACAGCTGTGTCAGCTGCAAATGTTTTATATTTAAATAAAATGCACATAAATGGTGACATTTTGTGTCATTTTAATACGCTATTGTGTTACTTTCCTATTACTACTGGACTACACCAGACAATGATCACAGATTTATATATTTAGCCTACATTTTATTCTTGAAATAAATACAACTTTGATTAGGCCTACTCACTTTGTACTGTCAATCAATTTCAACATCGTGCCCTAATTTAAGACCCTAAAAAGGTGAAGAAAAAACTCCATCAAGATCTAAAGCGTCACCAGGTAATTAGCCCAAAAGTGATTATGTCTGCTCTTATTATTCAAATCCCTCATTGTAACGCCCTCCCTATCTTACGCTCGTGGATTTATCCCTTATAAGGAATCTTAGAGGCATATATAACCACTCCTGATGCATCTTTGCAAATAAAGAGCAGGCGAAGAGCAGTCACTTAGCTGTACAACATCCTTTATCCCTCTGGATCACTAGTGGGCAAAGATGAACGGCACTGAGGGACACAACTTCTACATCCCCATGTCCAACAGGACAGGGCTAGTGAGGAGTCCTTTCGAGTATCCACAGTATTATCTAGCTGAGCCGTGGCAGTTTAAAATCCTTGCTGTATACATGTTCTTCCTCATCTGCTTGGGTCTACCCATCAATGGCCTCACATTGGTGGTTACAGCTCAACACAAAAAGCTTAGGCAACCTCTCAACTTCATTTTGGTCAACCTGGCTGTGGCTGGTACCATCATGGTTTGTTTTGGATTCACATTCACTTTCTACACAGCAATTAATGGCTACTTTATTCTGGGTCCAACTAACTGTGCGATTGAGGGCTTCATGGCAACACTTGGAGGTGAAGTTGCCCTTTGGTCACTTGTGGTGCTGGCCATCGAGAGATACATTGTGGTTTGTAAGCCAATGGGTAGTTTTAAATTCTCATCCACCCACGCAATGGCAGGAATCGCATTTACATGGATAATGGCCATGGCATGTGCGGCTCCCCCTCTGGTTGGCTGGTCCAGATATATTCCTGAGGGAATGCAGTGTTCATGTGGACCAGACTACTACACCCTGAATCCTGAATACAACAATGAATCATATGTCATCTACATGTTCGTCTGCCATTTTATACTTCCGGTCACCGTAATCTTCTTCACCTATGGGCGGCTTGTTTGCACCGTCAAGGCGGCTGCAGCTCAACAGCAGGACTCAGCATCTACCCAGAAGGCTGAGAGGGAAGTGACAAAAATGGTCATCCTGATGGTTTTTGGTTTTTTGATGGCTTGGACCCCTTATGCCAGTGTTGCTGCCTGGATCTTCTTTAATAAGGGAGCTGCTTTCAGTGCCCAGTTCATGGCTATTCCTGCCTTTTTCTCAAAGAGCTCAGCCTTATATAACCCTATCATCTATGTGCTGCTAAACAAACAGTTTCGGAACTGCATGCTGACCACTCTTTTCTGTGGAAAGAATCCTCTTGGTGATGACGAGTCCTCAACTGTGTCCACCAGCAAGACGGAGGTGTCCTCTGTATCTCCAGCATAGACTTTTCAATCTCTCACAGATTATGCTCTTTTAGTCATTGATCAATTTGGGCATCTGAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTAGTTTTTGGTTGCGTTCACTATCACCATTAACTGAACTCAAAGCTCAGGATTAATTGGGTGATCAGTGAACACTGACATAGTGGTTTTATTTTTATGTGCCGGGAGGCTAGCATTTATATCTTTTGCCTAAAATGTATATATATTTTGTAAATAATGAAAAAGGATTACATAGAA

Function

symbol description
opn1mw1 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Located in photoreceptor outer segment. Is expressed in several structures, including endocrine system; heart; integument; photoreceptor cell; and visual system.
opn1mw4 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; gut; heart; integument; and visual system.
opn1mw2 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including green sensitive photoreceptor cell; heart; integument; testis; and visual system.
opn1mw3 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; gut; heart; integument; and visual system.

NR:

description
green-sensitive opsin 1

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04250 RHO, OPN2; rhodopsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10103264_10104931.mRNA True 2306 mRNA 0.43 5 10102271 10105194

Neighbor

gene id symbol gene type direction distance location
CI01000340_10097098_10098784 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding upstream 3203 10096480 ~ 10099068 (+)
CI01000340_10085575_10089504 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding upstream 12479 10085317 ~ 10089792 (+)
CI01000340_10081602_10083643 NA coding upstream 18404 10081602 ~ 10083867 (+)
CI01000340_10066847_10072213 SLC6A13L coding upstream 29971 10065089 ~ 10072300 (+)
CI01000340_10038089_10047331 FKBP5 coding upstream 53889 10038033 ~ 10048382 (+)
CI01000340_10137511_10221465 CADPSB, CADPS coding downstream 32317 10137511 ~ 10221465 (+)
CI01000340_10223734_10225662 RSG1 coding downstream 118540 10223734 ~ 10226212 (+)
CI01000340_10227896_10249819 TWF2, WDR82P1, WDR82.L, WDR82.S, WDR82, SWD2 coding downstream 122702 10227896 ~ 10250768 (+)
CI01000340_10252718_10253859 NA coding downstream 147524 10252718 ~ 10254453 (+)
CI01000340_10296583_10355505 SRGAP3 coding downstream 191389 10296583 ~ 10356100 (+)
G490915 NA non-coding upstream 69946 10029238 ~ 10032325 (+)
G490875 NA non-coding upstream 74150 10021887 ~ 10028121 (+)
G490880 NA non-coding upstream 82036 10008303 ~ 10020235 (+)
G490870 NA non-coding upstream 155313 9946190 ~ 9946958 (+)
CI01000340_09935375_09945285 EIF4ENIF1 non-coding upstream 164671 9935319 ~ 9945285 (+)
G491108 NA non-coding downstream 10962 10116156 ~ 10119206 (+)
G492101 NA non-coding downstream 363006 10468200 ~ 10470924 (+)
G492136 NA non-coding downstream 370947 10476141 ~ 10476566 (+)
G492137 NA non-coding downstream 372263 10477457 ~ 10477664 (+)
G492139 NA non-coding downstream 373396 10478590 ~ 10478848 (+)
G490896 NA other upstream 257219 9831473 ~ 9845052 (+)
G490839 NA other upstream 864712 9234973 ~ 9237559 (+)
G490826 NA other upstream 970874 9125184 ~ 9131397 (+)
G490645 NA other upstream 1059170 9038812 ~ 9043101 (+)
G489634 NA other upstream 3401483 6694221 ~ 6700788 (+)
G492194 NA other downstream 546489 10651683 ~ 10652694 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other downstream 678208 10781468 ~ 10787792 (+)
G492847 NA other downstream 1503912 11609106 ~ 11696961 (+)
G493617 NA other downstream 2950198 13055392 ~ 13069652 (+)
G493740 NA other downstream 3410033 13515227 ~ 13517111 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032252 opn1mw4 coding NC_007117.7 CM002890.2 41200500 ~ 41202554 (+)