CI01000340_10117381_10122090 (SYNPR)


Basic Information

Item Value
gene id CI01000340_10117381_10122090
gene name SYNPR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10116722 ~ 10122090 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10117381_10122090.mRNA
CTTTTTGCTGTTTTAGCATTTGCAACATGTGGGGGATATTCTGGCCAGATAATGGTTAAAGTAGAATGTTTGGAATCTAAAATCCCAAACAACATCAGCATCAGTTTCAACTACCCATTCAGACTTCAGCAGGCACACTTCAGTGCTCCTCTGTGTGAAGGAACCAGGAAAGAGACTCTCTTTCTCGAAGGGGATTATGCTTCATCTGCACAGTTCTTCGTCACTGTGTCGGTCCTGGCTTTTCTCTATTCCCTTTTGGCCACAATTGTTTACTTCTTCTACCAGAACAAATACAGAGAGAAGAACAGAGGTCCAGTAGTTGACTTCTTGGTGACTTTAGTGTTCTCTAGCCTGTGGCTGGTAAGCTCAATTGCCTGGGCTAAAACTCTGTCTGGGGTGAAGACAGCCACTGATGTGCATCAAATCCTGCTGTTAATGTCTGCATGCAGAGCCCAGGAGAACTCATGTGAGGTCTTGCAGGAGCCCATCTGGACAAATCTCAACATGTCTGTGGCCTTTGGTTTTTTGAACTTCTTCCTTTGGGCTGGTAATATTTGGTTTGCCTACAAAGAGACAGGTTTGCATAAGTCCATCCAGCGCTATCCCTCCAGAACTCCCTCTGAGAAACGCGGCAGCTTCAGGCAGTACAGTCAAACCAGTTTTGATCAATCTGGAACTGGTTTTGGCCAGAGGCTCTACAACCAGGCGAGTTTTGACTTATCAAGCGGAGGCTTCAGTCTACCCCAAACCAGTCTAGGACAGCCGATGCTGTACCGACAGAGTATATCCAGCACTACAGTGAAACTAACTGCTTGCAGCTGCCTAGGATCCAAATTGCAGCTTTTAGGTGATCATGAGATTTTAGCCACTGGCATGTTGCTGGTGCCAAATTAAAGGTTACCATTGAGAAACTCTACAGCTGTTCAATTACAGGCCTTAGACTAAAAGAGTGCAGTGAGAGTGATTTAAAGTGCTTGCTAGAAAACAGAGAGATATGATTATGCAAGGCAGTAATGCACGTATAATTTTGATTAACACGTGTCAAACATGCTCTACATTGTATATATTGCCAGTATTTTTAAAATATTTAACAGTCAATGAATACTGTACTAAATAATACTGTAAATTCACACTAACATTAGAGTGTAAGGCTAGTTAAGGAGTGTTAAAATCGCCCTAAGAGCGCTTACACAGTTAATTACATAATGGCAGAATTATCATCTTACACGGTGACAAATGATGTCGCAGTGGCACTTATGTTTTACTCTAGGGGACGGAGTCTAAGCTAATCATAGACTCAGCCGAGCAAATGAAAAGATGTCATGGTGTTCGATGTTAGGAGGTACAAGTGTACGTGAAGAGGAGGCAGGACTGACCCTCGCTGTTACTCTACTGCAGTCCAATTTTTGTCATTCTGTTCATCCATCTGTCACTTCTGGCTCTTAGGCAGGGTCATGGTCATGGGCTTATAAAGATAAAGCATGAAGCTACAGCTACATACAATACATGTTGATTGCAGCCACCACCACCTACTACCTAAAACCACAAATAAA

Function

symbol description
synpr Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10117381_10122090.mRNA True 1553 mRNA 0.43 5 10116722 10122090

Neighbor

gene id symbol gene type direction distance location
CI01000340_10051115_10063764 SLC6A13 coding downstream 52485 10050524 ~ 10064237 (-)
CI01000340_10025958_10028902 SRSF3 coding downstream 87133 10025656 ~ 10029589 (-)
CI01000340_10005818_10020244 NA coding downstream 96478 10005692 ~ 10020244 (-)
CI01000340_09987410_09989834 NA coding downstream 125210 9987308 ~ 9991512 (-)
CI01000340_09985390_09986420 HDHD3 coding downstream 130302 9985175 ~ 9986420 (-)
CI01000340_10258762_10264352 NA coding upstream 136463 10258553 ~ 10265625 (-)
CI01000340_10270796_10271185 NA coding upstream 148340 10270430 ~ 10271269 (-)
CI01000340_10357202_10357606 NA coding upstream 234668 10356758 ~ 10359856 (-)
CI01000340_10468562_10470670 CAV3 coding upstream 345973 10468063 ~ 10472083 (-)
CI01000340_10473924_10477962 NA coding upstream 351779 10473869 ~ 10479040 (-)
G492005 NA non-coding downstream 14313 10096672 ~ 10102409 (-)
G492000 NA non-coding downstream 43482 10072032 ~ 10073240 (-)
G492001 NA non-coding downstream 49537 10065529 ~ 10067185 (-)
G491915 NA non-coding downstream 81832 10032320 ~ 10034890 (-)
G491993 NA non-coding downstream 156712 9959744 ~ 9960010 (-)
G492017 NA non-coding upstream 2951 10125041 ~ 10125278 (-)
G492020 NA non-coding upstream 6970 10129060 ~ 10129260 (-)
G491908 NA non-coding upstream 15155 10137245 ~ 10222822 (-)
G492037 NA non-coding upstream 113757 10235847 ~ 10236277 (-)
G492050 NA non-coding upstream 207771 10329861 ~ 10339931 (-)
G491712 NA other downstream 1317145 8799201 ~ 8799577 (-)
G489511 NA other downstream 3789350 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3896080 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4791578 5320753 ~ 5330215 (-)
G493109 NA other upstream 1551656 11673746 ~ 11677994 (-)
G493266 NA other upstream 1945087 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2490126 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 4091258 14318365 ~ 14336258 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033084 synpr coding NC_007117.7 CM002890.2 41223204 ~ 41229787 (-)
tiger barb (Puntius tetrazona) G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 unknown NC_056704.1 CM032073.1 20161440 ~ 20166279 (-)