CI01000340_10270796_10271185


Basic Information

Item Value
gene id CI01000340_10270796_10271185
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10270430 ~ 10271269 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10270796_10271185.mRNA
ATACTCCGCAATGATCTCCTTGTCTTTCTTAATTTTCGTCTGAGATGACATTTTTCTTGAGGTATAAATGTAGAATCCAGTGATATGTTGAGCCTTTCGCGCGAGCCCCCGACTGTCACAGTTTGCAGCTTTTTCCCTTCTTCCTCACCAGTTACTATCAGAAGTGTCCTTGAATTTACATCGGCTGGTAATCCTGATACTTTCCCCTTCAGAAAGAAGCAGCTGAAAGAAAGCACCCCGGGCACACCTGCGCTTTCTCAGATCCGAACCCTCGCGTTTAGAAGAGCTGCTGGGCTCGGGGAGAGGCTGCTCCTCCTTGCTCAAGATCTGCCATCTGAAGTGACTGAAGAAAATACAATTCCTACCTACAAGAAGAGGTTTCGGTATGAACGATGCGGCGTTGTGTCTGTGTCCATGCCGTTTATGTGGTCCTCATGTCCGCGTGCTCTGAAAGGAAGAGTTGAGATGGCATAATCTTGATTGGGCTCTGTTGCATTAGAATCTCAGCAGGCAAAGCAAAGAACAGAATAGCGCCCGAGCGTCGTATGTGACTCCTCCTATTGTCGAATTCTCTCCCTCAACCAATCCAATCAGTTCCATATGCACCCCTCCCAGGGCACACACACAAACACGCACTCTCACATACAGGGCGTTTCGTTTACACTTCCATTCTCTGAAGCCAATGTGTTTAGCTCAAGGTATCATTTTCCTCAGAGGTATCAGCGTGTTTGTATTTTGTCCCATTTCTCATAACTAAAATATGAAGTTGTACACACAAAAGATTGAATAGGGCTGTGAGTACCAACACTTCACACAATGACCTATAAGACAGGCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10270796_10271185.mRNA True 840 mRNA 0.46 1 10270430 10271269

Neighbor

gene id symbol gene type direction distance location
CI01000340_10258762_10264352 NA coding downstream 4805 10258553 ~ 10265625 (-)
CI01000340_10117381_10122090 SYNPR coding downstream 148340 10116722 ~ 10122090 (-)
CI01000340_10051115_10063764 SLC6A13 coding downstream 206193 10050524 ~ 10064237 (-)
CI01000340_10025958_10028902 SRSF3 coding downstream 240841 10025656 ~ 10029589 (-)
CI01000340_10005818_10020244 NA coding downstream 250186 10005692 ~ 10020244 (-)
CI01000340_10357202_10357606 NA coding upstream 85489 10356758 ~ 10359856 (-)
CI01000340_10468562_10470670 CAV3 coding upstream 196794 10468063 ~ 10472083 (-)
CI01000340_10473924_10477962 NA coding upstream 202600 10473869 ~ 10479040 (-)
CI01000340_10485958_10487241 NA coding upstream 214656 10485925 ~ 10487330 (-)
CI01000340_10497000_10501726 PARP3 coding upstream 225367 10496636 ~ 10502577 (-)
G492037 NA non-coding downstream 34153 10235847 ~ 10236277 (-)
G491908 NA non-coding downstream 47608 10137245 ~ 10222822 (-)
G492020 NA non-coding downstream 141170 10129060 ~ 10129260 (-)
G492017 NA non-coding downstream 145152 10125041 ~ 10125278 (-)
G492005 NA non-coding downstream 168021 10096672 ~ 10102409 (-)
G492050 NA non-coding upstream 58592 10329861 ~ 10339931 (-)
G492047 NA non-coding upstream 78788 10350057 ~ 10353949 (-)
G492343 NA non-coding upstream 408049 10679318 ~ 10679596 (-)
G492364 NA non-coding upstream 481459 10752728 ~ 10752946 (-)
G491712 NA other downstream 1470853 8799201 ~ 8799577 (-)
G489511 NA other downstream 3943058 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4049788 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4945286 5320753 ~ 5330215 (-)
G493109 NA other upstream 1402477 11673746 ~ 11677994 (-)
G493266 NA other upstream 1795908 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2340947 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3942079 14318365 ~ 14336258 (-)

Expression


Co-expression Network