CI01000340_10882106_10884072


Basic Information

Item Value
gene id CI01000340_10882106_10884072
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10880971 ~ 10884198 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10882106_10884072.mRNA
GCATAAAATCACCCAAAAATAGGTTGTGTGGACCACTTTTATTATGCTTTTTTTGTGTGTTGCATGGAAAAAATATCAACATAAGGCTATGTTCACACTGTCAGTTTTTGGGATTAACAACTGCATTTACTTACAGGTGTGAGTCTCGAAATGTTCGTTCACACAGCAAATTCTCAAATACTGTCTGTATGAACGTGCAACGGGAGTCAAGCCCATTATCCATAGTGACAGTGACCAAAGTAATATCAAAGATGGTGATGTCCATAAAACTGAAAAGTCTTTCAGGACTGTTTTGACATGACAACAGTCCAATTGAGCCGTAAGTTTGTTCATCAAATCTTCATTAACCGACAGCGGCTTTTTTATCTGGGCAGAGAGTGGAGCATTTGAGTTGTGTGTAGAACACAAAAGTGGAGAATAATGTCCGGATCTAGAACCTTCAGATGACACACATAGAAACCACACAAGAAAACTCTCAAAACATGGTAGACACACGTTTGTGCAGCACAGAGCGGTTCTCTCACATGTGACAGAAAACTAGTTGTCCAGTCCGATTGCATTAGGTTGTGGGTTTTCCAATGCGGTTGTGCGTCCTGAAAATCTCCGGGTGTGAGTTTGGTTATTTAATGAGGTTGTCACTCCTGTAAATAACTGATCTGAGTGTGAATGTAACCTTATTAATGACACAAATACAGGACTGACAACCGCATTCCGCCGCTGTGTGAACATGGATTCATAATGACATGAGGGTGAATAAATAATGATTTTGTTTTCATTTTTGGGTCAACTGTCCTTTTAAGGTCAGATTGTTCCTCTTAGGAGCCACAGTGGGCACGAAGAGGAGAGGAAAAGGGTGGAAAAATTTCCCCCCACAAAAAAGTGTGTGTGCTTATTACAAAGCATGCGTGTCTGTGTGCATACACCATTTTCTTTCCATCAGCAAAGACAATGCCTTTCCCTTGTGTGTCTACTGTTTGGTTGCCATGGCAGCATTCCTTTTGTTACCTGTCACAGCGTTATGGCACATTTCACCTGTTATTTGATAGCTATGTTTTTGTGCATCAAGTTCTTAGAAATTTCAAAATTCACCCTTTGATCTAACGGCATAGAGAAGGTCTTATTTTTAAGTATTGCCATGGGAGTGACAACAGATACAACCGTTTCATTCTGGGCTGACAACAACTGCCACCATTTATTACCATCTGTCAGTCAGGCACGGACTTTAATACCACAGCAGTACTTATACCAGACAATGACCTGTACTGACACACCAAAGCATCATGACAGAGGAAACAGTAAGTTTTTCCTCCAGATGTTCCTCGTCACTTCAGAGGAATGGCAAATGTGGGCTGGAGAGTTAGACGGTGGGAAAGATGTGCTTGTGGTTCTGAGCCAAATTCAGCTGGAGTCTCGAATGTCTTAACATGGTGTGTAGATTGTATACTTGTGTTTGTGAGTGTCTGAGATGAGACTGGAATTGTTGGTGTTGTCTGTGGTGGCAGCAAGCTGTCTGCTCATGTTGTTGTGTGATGAAGTGATCTCATGCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10882106_10884072.mRNA True 1549 mRNA 0.42 3 10880971 10884198

Neighbor

gene id symbol gene type direction distance location
CI01000340_10869243_10869956 NA coding upstream 10573 10868237 ~ 10870398 (+)
CI01000340_10790372_10803993 NA coding upstream 76572 10790372 ~ 10804399 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV coding upstream 94620 10781468 ~ 10787792 (+)
CI01000340_10731548_10747121 MST1RA coding upstream 133323 10730673 ~ 10747648 (+)
CI01000340_10644426_10645811 GPX1, GPX1B coding upstream 235121 10644426 ~ 10645850 (+)
CI01000340_10896398_10912573 SEMA3FA, SEMA3F coding downstream 12036 10896234 ~ 10912704 (+)
CI01000340_10915894_10921086 GNAT1, GNAT, GNAT1.S coding downstream 31696 10915764 ~ 10921200 (+)
CI01000340_10975991_10979709 TCTA coding downstream 91113 10975311 ~ 10980045 (+)
CI01000340_11013452_11016952 NA coding downstream 128739 11012937 ~ 11017219 (+)
CI01000340_11096711_11098581 ARL6IP5, ARL6IP5A coding downstream 212513 11096711 ~ 11099309 (+)
G492402 NA non-coding upstream 16916 10863820 ~ 10864055 (+)
G492399 NA non-coding upstream 20269 10860439 ~ 10860702 (+)
G492249 NA non-coding upstream 130098 10750647 ~ 10750873 (+)
G492190 NA non-coding upstream 188028 10689846 ~ 10692943 (+)
G492230 NA non-coding upstream 192109 10688584 ~ 10688862 (+)
G492416 NA non-coding downstream 42911 10927109 ~ 10927501 (+)
G492420 NA non-coding downstream 46368 10930566 ~ 10931507 (+)
G492405 NA non-coding downstream 50652 10934850 ~ 10936632 (+)
G492421 NA non-coding downstream 103192 10987390 ~ 10988734 (+)
G492194 NA other upstream 228277 10651683 ~ 10652694 (+)
G490896 NA other upstream 1035919 9831473 ~ 9845052 (+)
G490839 NA other upstream 1643412 9234973 ~ 9237559 (+)
G490826 NA other upstream 1749574 9125184 ~ 9131397 (+)
G492847 NA other downstream 724908 11609106 ~ 11696961 (+)
G493617 NA other downstream 2171194 13055392 ~ 13069652 (+)
G493740 NA other downstream 2631029 13515227 ~ 13517111 (+)
G493782 NA other downstream 2937996 13822194 ~ 13923213 (+)
CI01000340_14100335_14108817 SLC16A1A other downstream 3213433 14099138 ~ 14108941 (+)

Expression


Co-expression Network