CI01000340_10915894_10921086 (GNAT1, GNAT, GNAT1.S)


Basic Information

Item Value
gene id CI01000340_10915894_10921086
gene name GNAT1, GNAT, GNAT1.S
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10915764 ~ 10921200 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10915894_10921086.mRNA
ATGGGGGCCGGGGCGAGCGCAGAGGAGAAGCACTCCAAGGAGCTAGAGAAGAAGCTGAAAGAGGACGCCGACAAAGATGCCAGGACCGTCAAACTTCTGCTGCTAGGTGCTGGTGAGTCGGGGAAAAGCACAATTGTCAAACAGATGAAAATTATTCACAAAGATGGTTACTCCGTTGAAGAGTGTATGGAGTTCATTATCATCATCTACAGCAACACCCTGCAGTCTATCCTGGCCATTGTGAGGGCCATGACCACACTCAACATTTCCTATGGAGATGCTTCTGCACAGGATGATGGAAGGAGGCTGATGCACTTAGCGGACACCATCGAGGAAGGCTCCATGCCCAAGGAGCTGTCAGACATCATCCTCAGGTTGTGGAAGGACTCGGGTATCCAAGCGTGCTTTGAAAGGGCCTCCGAATACCAGCTCAACGACTCTGCCGGATACTATCTGAGTGACCTGGAGAGATTGATCCAACCTGGCTATGTCCCTACTGAACAGGACGTCCTGCGATCAAGAGTGAAGACCACCGGTATCATCGAGACCCAGTTCGGCTTAAAGGACCTCAACTTCAGGATGTTTGATGTGGGCGGTCAGCGCTCAGAGAGGAAGAAGTGGATCCATTGCTTTGAAGGTGTGACCTGTATCATCTTCATCGCTGCATTGAGCGCATACGACATGGTGCTGGTGGAGGATGATGAAGTGAACCGAATGCATGAGAGTCTCCACCTGTTCAACAGCATCTGTAACCACCGTTACTTTGCCACCACATCCATTGTGCTCTTCCTCAACAAGAAGGATGTCTTCTTGGAGAAGATCAAGAAAGCTCATCTGAGCATGTGCTTCCCTGATTATGATGGTCCCAACACCTTTGAGGATGCTGGTAACTACATCAAGGTGCAGTTCTTAGATCTGAACTTGCGACGAGACATCAAAGAAATCTACTCCCACATGACCTGTGCCACAGACACAGAGAACGTCAAGTTTGTGTTTGATGCCGTAACAGACATTATCATCAAAGAAAATCTCAAAGACTGCGGTCTCTTCTAAACAAGCCATTTGTTGGAAGAGGTGAATATATTGTTATAGTAATATAATATGATAAGTATTGCATTATGTTGTTCTAGCATATCAAACATCAATACAATTTCTATACGTGCATAA
>TU564825
ACTCGAAACAATTCACCAGGTCACCAAGATCCAGTCGTGGTGTGAGCTGTATCGTTGACAGCACCTGGAGGCCTCTGTGCAAGCGAGTGGTTATCCAGAAGGACTTCTTTTTTCCTAATCAAGAGTCAGTATGGGGGCCGGGGCGAGCGCAGAGGAGAAGCACTCCAAGGAGCTAGAGAAGAAGCTGAAAGAGGACGCCGACAAAGATGCCAGGACCGTCAAACTTCTGCTGCTAGGTAACAACGCATGAGGGGACTCAAATGATTGTTCAAGTCAAACATGAAGAACAGCTAATTTGCTAGATTTGGAAAATGGTATATTGCAGATTCGTTGTATAGCCTTCCCATTTAAATCGTCATAATAAACAGGCAATGACTGAACTACATTTTATGTTTTATGTAATTTCTTTGCTGTGATATGAAAGGAATATTAAATATCTAAAGCTTACATACAAGAAATAAGCTAATCAAAATTTGTCTTACTGAAATTCAAACCAAAGTAGTGCTAAATAAACTGGGGACACAAAATTGACCGGATAGTTTATAAAAGTCTCTATATCTCAATTAAATAATTTCAAAACATTTTTCAAGTATGCATGTACATTTATAACTGCCCGTGTCTTTGTCCGTGAAGTGATGTGGGTCAGGGTTATGGCACATCAAGCTTGAAGGGGCTTAAGACAAGAATAATAAGCCTCAAGCCTCTTAATGTAATCCACCAAAAGATAAACAAAGACAGAGGGGAGAAGAAGCATGTATTCCGGCATTAATTCACTTACGCATGCCAAAATAAATCAAATATTACTGTGCAACTGTTCTAAACAAACATCTGCAGTCTGACAAATCTCAGAGGTCCACTGAGGTTTTACCCCTCAAAACACTGGCTCAATGTAGATTTATGGTTTTCAGCCGGGTATTTGCAGACCTGGAGCTCAGTTGTATACTGTA
>TU564831
TTTTCCTTTCAGGTGCTGGTGAGTCGGGGAAAAGCACAATTGTCAAACAGATGAAGTAAGTGCCGAGAAAACAAACATGAAAATACAATGAATTGGATTATGTGAGACTATCTTCAATAATGATTCACATTAAGTGCTCTTTTCTATTATAACCAATTAATAACTACATCAATTAATTGTCAATTATTTTCCATCACAGAATTATTCACAAAGATGGTTACTCCGTTGAAGAGTGTATGGAGTTCATTATCATCATCTACAGCAACACCCTGCAGTCTATCCTGGCCATTGTGAGGGCCATGACCACACTCAACATTTCCTATGGAGATGCTTCTGCACAGGTGCTCTACAGCATTCATTAGCCATTTACAGAAATAAAAGGTTACAGTATGGAATATACAGTTGGTGACACCATGGCACAATGATGATATCAGAGGGTAATACCAGAGTACTGAATGATTATCGTATGTTACACCTAGGTTATTTCAGGAATACCATTGTATTACCAATGTACCACGGTATTGCCCATGCAAAAATATATCAGGAGTGTTTAACTACTATGTAGTTATATCAAAACAAATGTATTATAGTAATTACAATAACTGGGTT

Function

symbol description
gnat1 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in G protein-coupled adenosine receptor signaling pathway; adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; and response to light stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in pineal complex and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1G; congenital stationary night blindness autosomal dominant 3; and night blindness. Orthologous to human GNAT1 (G protein subunit alpha transducin 1).

GO:

id name namespace
GO:0006457 protein folding biological_process

KEGG:

id description
K04631 GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10915894_10921086.mRNA False 1167 mRNA 0.47 8 10915894 10921200
TU564825 False 947 lncRNA 0.40 1 10915764 10916710
TU564831 True 609 lncRNA 0.36 1 10917689 10918297

Neighbor

gene id symbol gene type direction distance location
CI01000340_10896398_10912573 SEMA3FA, SEMA3F coding upstream 3190 10896234 ~ 10912704 (+)
CI01000340_10882106_10884072 NA coding upstream 31696 10880971 ~ 10884198 (+)
CI01000340_10869243_10869956 NA coding upstream 45496 10868237 ~ 10870398 (+)
CI01000340_10790372_10803993 NA coding upstream 111495 10790372 ~ 10804399 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV coding upstream 129543 10781468 ~ 10787792 (+)
CI01000340_10975991_10979709 TCTA coding downstream 54111 10975311 ~ 10980045 (+)
CI01000340_11013452_11016952 NA coding downstream 91737 11012937 ~ 11017219 (+)
CI01000340_11096711_11098581 ARL6IP5, ARL6IP5A coding downstream 175511 11096711 ~ 11099309 (+)
CI01000340_11177838_11181646 MITFA coding downstream 256638 11177838 ~ 11181914 (+)
CI01000340_11194496_11206585 NA coding downstream 273296 11194496 ~ 11206794 (+)
G492402 NA non-coding upstream 51839 10863820 ~ 10864055 (+)
G492399 NA non-coding upstream 55192 10860439 ~ 10860702 (+)
G492249 NA non-coding upstream 165021 10750647 ~ 10750873 (+)
G492190 NA non-coding upstream 222951 10689846 ~ 10692943 (+)
G492230 NA non-coding upstream 227032 10688584 ~ 10688862 (+)
G492416 NA non-coding downstream 5909 10927109 ~ 10927501 (+)
G492420 NA non-coding downstream 9366 10930566 ~ 10931507 (+)
G492405 NA non-coding downstream 13650 10934850 ~ 10936632 (+)
G492421 NA non-coding downstream 66190 10987390 ~ 10988734 (+)
G492445 NA non-coding downstream 118555 11039755 ~ 11040102 (+)
G492194 NA other upstream 263200 10651683 ~ 10652694 (+)
G490896 NA other upstream 1070842 9831473 ~ 9845052 (+)
G490839 NA other upstream 1678335 9234973 ~ 9237559 (+)
G490826 NA other upstream 1784497 9125184 ~ 9131397 (+)
G492847 NA other downstream 687906 11609106 ~ 11696961 (+)
G493617 NA other downstream 2134192 13055392 ~ 13069652 (+)
G493740 NA other downstream 2594027 13515227 ~ 13517111 (+)
G493782 NA other downstream 2900994 13822194 ~ 13923213 (+)
CI01000340_14100335_14108817 SLC16A1A other downstream 3176431 14099138 ~ 14108941 (+)

Expression


Co-expression Network