CI01000340_10935675_10941448 (ARL8B, ARL8BA, ARL8A)


Basic Information

Item Value
gene id CI01000340_10935675_10941448
gene name ARL8B, ARL8BA, ARL8A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10935332 ~ 10941681 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10935675_10941448.mRNA
AGACCACATCAAAACTGAATCATAACAGGGAAGGTGGTCTTGTGGTTTAGATGTGCAATTTGAAGTGTATTTATTGATGTGATTACTAATTACTGTGATTACTGACTACCAAAGATGAATTCCTAAATCGATTGACACATTTCTTACTGAGATTGAGTGTATTGTTTGAATAAACATTAGGAATGCAAGAAGTTTTTTTTTTAGAATCACAAAATGTACACACAATACAAACGATGTTTTGCAAGTTTTTCTGTACTATATTGGCACAGAACCTTTATGACAGTGGCAATGACCTGAATTTGAGAATCTCTGAAGGCCAGTTCAGCGAAGACATGATTCCAACCGTCGGGTTCAACATGAGGAAGGTCACAAAAGGCAACGTCACCATCAAGATCTGGGATATAGGAGGTCAGCCGAGGTTCAGGAGCATGTGGGAGCGATACTGTCGTGGGGTGAATGCAATAGTGTACATGGTGGATGCAGCGGACCGGGAGAAGGTTGAAGCTTCCAGAAACGAGCTGCACAATCTTTTAGACAAGCCACAGTTACAAGGAATTCCTGTGTTGGTGCTGGGCAATAAAAGAGATCTACCCAATGCGCTGGATGAGAAACAGCTAATTGAAAAAATGAACTTGGCTGCTATTCAAGACAGGGAGATCTGCTGCTACTCGATTTCCTGCAAAGAGAAAGATAACATTGCACTCAAAGTCAAGAAGAAGCTGAAAGTGTCTTCAGAGGGCCCACTGTCTATCCGCTGCCATGTTCCTCTCACAACGCATCCTGCTCACTTTGTGAAACTGTACAGTTCTTCATACCGCTCCCCTCACACTACCCTGCTCGTCTGCTCCCGTAACTCTTCACAAGCTCCTCCTCCCAAACTGCATCAGTCATGTCAATGATACATCAGTCGCTAAGAAAGACGCTAGCCTACAGAATGAGTTCCTCCACCTCTCACGGCCTGCTGTCAGATGAACATTATGGATTCATGGTTTTGCAAATCCCCGCAGCTCCAGTGGTCTCCAGTTGGTGTTTCCTGGACAAATCTATTGAAAAACTGAGAAGAATCAAAACTTTAATATAGTGTTAAGCCTTTTTTTTCTCTCCAGTCTGTCAGATTATGCTCATGAGAGTGTGTAATATCATTTGGACTGTTGCTTTTATTTCTTGCCATTTCTCTTTCCCCCCCAAATCGTCTCTTGAGAAATCTGTAATATTTAAATGAGGAGCAATCTAGTAAATAAA

Function

symbol description
arl8ba Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in autophagosome-lysosome fusion; late endosome to lysosome transport; and lysosome localization. Predicted to act upstream of or within cell division; chromosome segregation; and protein transport. Predicted to be located in lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8B (ADP ribosylation factor like GTPase 8B).
arl8a Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within protein transport. Predicted to be located in late endosome membrane and lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8A (ADP ribosylation factor like GTPase 8A).
arl8b Enables guanyl ribonucleotide binding activity and tubulin binding activity. Involved in several processes, including calcium ion regulated lysosome exocytosis; lysosomal transport; and vesicle fusion. Located in cytolytic granule membrane; midbody; and spindle midzone. Colocalizes with lysosomal membrane.

GO:

id name namespace
GO:0032418 lysosome localization biological_process

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10935675_10941448.mRNA True 1242 mRNA 0.42 7 10935332 10941681

Neighbor

gene id symbol gene type direction distance location
CI01000340_10924696_10934000 EDEM1 coding downstream 1332 10924384 ~ 10934000 (-)
CI01000340_10690474_10697545 IP6K2, IP6K2A coding downstream 235741 10689932 ~ 10699591 (-)
CI01000340_10667602_10671566 SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1 coding downstream 263766 10667532 ~ 10671566 (-)
CI01000340_10664417_10665925 EMC3, POB, EMC3.L coding downstream 269407 10664104 ~ 10665925 (-)
CI01000340_10648767_10660257 USP4 coding downstream 275075 10648548 ~ 10660257 (-)
CI01000340_10951922_10954429 NA coding upstream 10153 10951834 ~ 10954436 (-)
CI01000340_10962027_10966453 NA coding upstream 20043 10961724 ~ 10967360 (-)
CI01000340_10980323_10984372 GLYCTK coding upstream 38405 10980086 ~ 10984372 (-)
CI01000340_11005204_11007357 LRRN1 coding upstream 62757 11004438 ~ 11007434 (-)
CI01000340_11086607_11088953 NA coding upstream 144478 11086159 ~ 11089394 (-)
G492551 NA non-coding downstream 18665 10915322 ~ 10916667 (-)
G492400 NA non-coding downstream 74632 10860431 ~ 10860700 (-)
G492392 NA non-coding downstream 93662 10841453 ~ 10841670 (-)
G492385 NA non-coding downstream 108912 10826199 ~ 10826420 (-)
G492356 NA non-coding downstream 138063 10793259 ~ 10797269 (-)
G492586 NA non-coding upstream 18132 10959813 ~ 10960064 (-)
G492600 NA non-coding upstream 83251 11024932 ~ 11025149 (-)
G492603 NA non-coding upstream 87783 11029464 ~ 11029680 (-)
G492619 NA non-coding upstream 116601 11058282 ~ 11058772 (-)
G492630 NA non-coding upstream 135955 11077636 ~ 11077841 (-)
CI01000340_10357202_10357606 NA other downstream 572928 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 907349 10025656 ~ 10029589 (-)
G491712 NA other downstream 2135755 8799201 ~ 8799577 (-)
G489511 NA other downstream 4607960 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4714690 6095704 ~ 6194501 (-)
G493109 NA other upstream 732065 11673746 ~ 11677994 (-)
G493266 NA other upstream 1125496 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 1670535 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3271667 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 3605318 14546999 ~ 14552983 (-)

Expression


Co-expression Network