CI01000340_10951922_10954429


Basic Information

Item Value
gene id CI01000340_10951922_10954429
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10951834 ~ 10954436 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10951922_10954429.mRNA
TGATACTATGGACACTACTAAGCTCTGGTTTACGCTGCTCTGTGTTTGTGGCAGCTGGATTTTGAGTCTGGCTGTAGACTGTGACTGGACCACCGAGTATGAATTTGAAAATAGATGTTGTAAAGCCTGCCCTTCAGGTGAGTATCCCAAAGTGCCATGTCAAAGGAACAACAATGACAGTGTGTGTGAGAAATGTTCACCAAACCTTGCTTCGGCTAAGGACAGATGTTTCTGCAAAAATAATCATTTATGCATGGATGATAAATGTGACAAATGTGAGCCCAGAACAATATGTAAACCTGGACATCAACTGGATAGATTTGTTCCAAACATATCATCAGTTACAGTTCACCCAGGCAAATACGAAAAGGAGATCCATCCTACTCATTCCTTCATGGTGGCCTGTTTAACAGTCACAGTGTTGACCTGCCTGGTTTTTATCATGTATACTGCTTTTCAAATTTTCAAATACAAGATGCTCATAAAATATAGTTGCAAACTATCCAAGGAAGAAAAAGGTGAGGAATGTGACTTCAAGACAGAGGTATCAGAAGAATATTGCAAGTGTGATGTCTATGGCATTCCTTGAATATTCTCTGCATGTGATGTGAAGAACATCCAATGAAACAGACTTTCTTCAACTGACTGGATTGCATTTGCAATATAACATCTATAAA

Function

NR:

description
tumor necrosis factor receptor superfamily, member 18 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10951922_10954429.mRNA True 677 mRNA 0.39 4 10951834 10954436

Neighbor

gene id symbol gene type direction distance location
CI01000340_10935675_10941448 ARL8B, ARL8BA, ARL8A coding downstream 10153 10935332 ~ 10941681 (-)
CI01000340_10924696_10934000 EDEM1 coding downstream 17834 10924384 ~ 10934000 (-)
CI01000340_10690474_10697545 IP6K2, IP6K2A coding downstream 252243 10689932 ~ 10699591 (-)
CI01000340_10667602_10671566 SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1 coding downstream 280268 10667532 ~ 10671566 (-)
CI01000340_10664417_10665925 EMC3, POB, EMC3.L coding downstream 285909 10664104 ~ 10665925 (-)
CI01000340_10962027_10966453 NA coding upstream 7288 10961724 ~ 10967360 (-)
CI01000340_10980323_10984372 GLYCTK coding upstream 25650 10980086 ~ 10984372 (-)
CI01000340_11005204_11007357 LRRN1 coding upstream 50002 11004438 ~ 11007434 (-)
CI01000340_11086607_11088953 NA coding upstream 131723 11086159 ~ 11089394 (-)
CI01000340_11092046_11095664 TRNT1 coding upstream 136859 11091295 ~ 11095664 (-)
G492551 NA non-coding downstream 35167 10915322 ~ 10916667 (-)
G492400 NA non-coding downstream 91134 10860431 ~ 10860700 (-)
G492392 NA non-coding downstream 110164 10841453 ~ 10841670 (-)
G492385 NA non-coding downstream 125414 10826199 ~ 10826420 (-)
G492356 NA non-coding downstream 154565 10793259 ~ 10797269 (-)
G492586 NA non-coding upstream 5377 10959813 ~ 10960064 (-)
G492600 NA non-coding upstream 70496 11024932 ~ 11025149 (-)
G492603 NA non-coding upstream 75028 11029464 ~ 11029680 (-)
G492619 NA non-coding upstream 103846 11058282 ~ 11058772 (-)
G492630 NA non-coding upstream 123200 11077636 ~ 11077841 (-)
CI01000340_10357202_10357606 NA other downstream 589430 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 923851 10025656 ~ 10029589 (-)
G491712 NA other downstream 2152257 8799201 ~ 8799577 (-)
G489511 NA other downstream 4624462 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4731192 6095704 ~ 6194501 (-)
G493109 NA other upstream 719310 11673746 ~ 11677994 (-)
G493266 NA other upstream 1112741 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 1657780 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3258912 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 3592563 14546999 ~ 14552983 (-)

Expression


Co-expression Network