CI01000340_10962027_10966453


Basic Information

Item Value
gene id CI01000340_10962027_10966453
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10961724 ~ 10967360 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10962027_10966453.mRNA
AGAGAGAGCACCTTCACTTGAGTGTGTCATTTAATTTGATTGCCTCATCAAGATCAATAAATAAATGTATACCAGACCTGATGTTTTCAAGAATCAAATGAAAACTATGGGATGCTTTGTCTGCTAATATTTAGAAGAAGTCTCAGTTATTACACTGAATTTGGCATGTTAAATGGATATTAAATGGATGTCCAAAGAGATAATTCAAATTGACAAATTGTAATTTTCTTTCATGTTTCTCTGTCTATTCTGTCATGAGAACATAGAACATTTTATTAATGCAGCACACATGACAGAGATAAAGCAACCTGAATTCTTAAAGTAATTACAAGAGATTTCACTTCCTATTCTGGTTGAGAGAAAAATCCAGTAAAAAATCCAGTTGAGAAAAATCCAGTTCCAATATAATTGATATTCCAAAGAATTCAGAGAGTGAGAGGGAAAAAAAAAAATAATAAAAAAATAAAAAAACTTAAGCAGTTGTATGTGGTAGGCAATATATTAGAAATTGATAATTAAAAGGATGGCAAAACTGCAATAAATGTATAAGCAATAGCAATTCTTCACAATATGCTTTTAGTTTTAATTTAGAGCATTTTGTGTCAGGTTTTATTTTGTAACCATTTGACATGCACCAATCAGACTCAGAGTGATCAAATTTAACGGATGAAGTTAATGGCTATTTTTTTAAATATATATCTTCATATCAAGATGGTATTATTAACACAAAAAAACATACTGTATAATCCTACGTTTTTTCCAAAGTGGGTGAAGTTGAATACTGGTTGGGTAAATGGGGGGTTGGGTAAATGTCACCTTGTCTATTGACTCGAGGCTTCAGTCTCTATTTCCTCTTATTTGAGGGTTACACGCAGTTCCAACACTATACTACAGTGTTACTGCTGTCATGTTCTTCTACATGAAAGTCCTCTCAACTCTCTTGTGTTTGCTTCTACTTCACCAAAATGCAAGTGCTACGAAAGAGTGTCGAGCAGGTCAGAAGCTTGATTACCGTACGCAAGAGTGTGTGGACTGTCCAGAAAAACAGTACAACTCTAAAAGTGGAAAAAATCTTCATTGTGAAAACTGCAGGAAATGTGGAAAAGGTAGTATGGTAGTCGATAAATGCACATCTACAACAAACACTCGCTGCAATTGTATGAGCGGTTTTACACCCATTGATCAGCAGAATGAGATTTGCGTATGTAAAAAAGGTTCTGGACTGGATAGAACAGGACAGACTTGCATAAAATGTAAGAATGGATACTTCTCAGACAAAGAAGACTCAACTTGTCAAAAATTGAGAGAATGTAAAAGTGGGATTAAGTTAGCAGGCAACAGTACTTCTGATGCCGTTTGCGAAAATGGATCAGAAACGGGCTGGTCATGCTATGCGCTGGTATTCTTCTTCTGTCTGGACTCCTGTACCACAACTGTAAAGTCACCCACTGCATTCATAGCCACAAGAAAGTGGATTCTCGAAAAGTTGCAGCACCATCTGCAGGGCTACACAGCTGCAGATATCAAGATCAAGAGAATGAACCACATCCCTTGCATTCGTGTTAAAGAGCTTCACCGTTACAAGATCAGTTTCCTTCGCATTCTTCAGTTGAATTCTTGTAACAGGGAGTAGGCTGTTGCAAAATTTCAACATCAACTATCATTTGACTGCAGAGACTGCAGACAAAAATAGTTGAAATGATGCATAGAGAATCTTTTTTAATTTGCATGGTCCCTTTAAATCTAAAACTTAAAGCTGCAAACAAGAACTTACACTCATTCTATAAAATGGCCTTTGTCACTTTGGAAAATGTGATTTTTAATGTAAATTTTTTTTGCAGGATTTTAAACTCAGAATGTGTTTAAATGTTGTCGTGCAGGGAACATTTCAAACAAAATTCAGCAAAATGACTTTTCCATAGTGTAAAAAATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10962027_10966453.mRNA True 1936 mRNA 0.35 8 10961724 10967360

Neighbor

gene id symbol gene type direction distance location
CI01000340_10951922_10954429 NA coding downstream 7288 10951834 ~ 10954436 (-)
CI01000340_10935675_10941448 ARL8B, ARL8BA, ARL8A coding downstream 20043 10935332 ~ 10941681 (-)
CI01000340_10924696_10934000 EDEM1 coding downstream 27724 10924384 ~ 10934000 (-)
CI01000340_10690474_10697545 IP6K2, IP6K2A coding downstream 262133 10689932 ~ 10699591 (-)
CI01000340_10667602_10671566 SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1 coding downstream 290158 10667532 ~ 10671566 (-)
CI01000340_10980323_10984372 GLYCTK coding upstream 12726 10980086 ~ 10984372 (-)
CI01000340_11005204_11007357 LRRN1 coding upstream 37078 11004438 ~ 11007434 (-)
CI01000340_11086607_11088953 NA coding upstream 118799 11086159 ~ 11089394 (-)
CI01000340_11092046_11095664 TRNT1 coding upstream 123935 11091295 ~ 11095664 (-)
CI01000340_11107554_11132757 FRMD4B coding upstream 140135 11107495 ~ 11132757 (-)
G492586 NA non-coding downstream 1660 10959813 ~ 10960064 (-)
G492551 NA non-coding downstream 45057 10915322 ~ 10916667 (-)
G492400 NA non-coding downstream 101024 10860431 ~ 10860700 (-)
G492392 NA non-coding downstream 120054 10841453 ~ 10841670 (-)
G492385 NA non-coding downstream 135304 10826199 ~ 10826420 (-)
G492600 NA non-coding upstream 57572 11024932 ~ 11025149 (-)
G492603 NA non-coding upstream 62104 11029464 ~ 11029680 (-)
G492619 NA non-coding upstream 90922 11058282 ~ 11058772 (-)
G492630 NA non-coding upstream 110276 11077636 ~ 11077841 (-)
G492627 NA non-coding upstream 129294 11096654 ~ 11099325 (-)
CI01000340_10357202_10357606 NA other downstream 599320 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 933741 10025656 ~ 10029589 (-)
G491712 NA other downstream 2162147 8799201 ~ 8799577 (-)
G489511 NA other downstream 4634352 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4741082 6095704 ~ 6194501 (-)
G493109 NA other upstream 706386 11673746 ~ 11677994 (-)
G493266 NA other upstream 1099817 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 1644856 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3245988 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 3579639 14546999 ~ 14552983 (-)

Expression


Co-expression Network