CI01000340_11096711_11098581 (ARL6IP5, ARL6IP5A)


Basic Information

Item Value
gene id CI01000340_11096711_11098581
gene name ARL6IP5, ARL6IP5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 11096711 ~ 11099309 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_11096711_11098581.mRNA
ATGGCTAAAGTGGAAATCGCCCCTTTGAGAGACTGGGATGATTTCTATCCAGGCTCAGAGCGCTTCGCCAGACCAGACACGCGAGATTTGGCGAAATGGAACAACAGAGTGGTCAGCAACCTCCTGTATTATCAAACAAACTATCTGGTGGTGGCAATCGTTGTATTCCTGATTGTAGGGTTCATGAACCCTGTGAGCATGTTCACGGGTGCAGTAGTGATCGCTTCTGTCTTCATTGGTTCTGTATGGGCAGGGGAGAACAAGGCAATCATCAAAAGATTCAAGAAGGAGAACCCTGCCTTGTTTGTTTTCCTGGTGATGGTCGTGAGCTACTTCCTCATGTCACTCTTCGGTGGAGTTATGGTATTCCTGCTTGGAATCAAGCTGCCACTTCTGTTGATCTTTGCACATGCATCGCTTCGCCTACGGAACATCAAAAACAAACTGGAGAATAAGATGGAGAGCGCTGGACTCAAGAAGTCACCCATGGGGATCATACTTGAAGCATTGGGTCAACAAGAAGAGAACTTCAGTAAAATTCAAGACATTCTGGAGAGCAAACTGAAGAATGAACTCTGTCAATAGTGCCTTTCTCACCAATACATGAAGGAACTGCTTTCAGCTGGCACAATTTGTGAAATCCACTCCGTTTCTTCCAACATGTGTATTTGGCAAAAAAAAAAAAAAAAAAAAATTTCTCTCCTCAGTGTTTTCTGTAAAGGGATGAACAAATTGTATTAAAAAAAAAGAGTGTTTATAATGTTTGTTTACATCTCAGGTCAAATGTAAGAGGATGCAATTCAAATCGTCTTTCAAAGATCTTTTCTTTCTATGACCTGTTGGGTAATGTGTCATATGTGTGCATAATGAGTTCTTTTCTTTCAAAATACATACATTCTTACATTAAGAAAATTTAAAGTATAACATAAGATATCATCAGGTTTAAAAGATTTAACATCTCCGATTTTTCTGCAGTGTGATGATGGAACTGGAATTCTACTAATAATGAGGTACAATACTTGGTTGAAGAATCGCTTCTGTTTGTTGTTTATGTGAACTTTATTAAACATCATATTGCTGTTGCAACTGCTTTGCAAAAGCAGTTAGCAATTTGAGTCCTGCACTACAATGATTTACCATAGGAAAGGGAGTTTTAGACACTCCAGGTTTTTTGCATCATGCCCAAGATCATCCCTTACCTTTGGTAAATTACTGTAATGCACTGCAATGTTTTGTTGTCACCTATTAGGTAAAACAAGTCATATGTGAATGTCCTGTGATGCTATACTCCTAAATCTATGCAAAAAGTGTTA

Function

symbol description
arl6ip5a Predicted to be involved in negative regulation of transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in yolk syncytial layer. Orthologous to human ARL6IP5 (ADP ribosylation factor like GTPase 6 interacting protein 5).
arl6ip5 Involved in several processes, including intrinsic apoptotic signaling pathway in response to oxidative stress; negative regulation of mitochondrial membrane potential; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Acts upstream of or within cellular response to organic cyclic compound and protein transport. Located in membrane.

NR:

description
ADP-ribosylation factor-like 6 interacting protein 5

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K20393 ARL6IP5, PRAF3; PRA1 family protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_11096711_11098581.mRNA True 1313 mRNA 0.39 3 11096711 11099309

Neighbor

gene id symbol gene type direction distance location
CI01000340_11013452_11016952 NA coding upstream 79492 11012937 ~ 11017219 (+)
CI01000340_10975991_10979709 TCTA coding upstream 116666 10975311 ~ 10980045 (+)
CI01000340_10915894_10921086 GNAT1, GNAT, GNAT1.S coding upstream 175511 10915764 ~ 10921200 (+)
CI01000340_10896398_10912573 SEMA3FA, SEMA3F coding upstream 184007 10896234 ~ 10912704 (+)
CI01000340_10882106_10884072 NA coding upstream 212513 10880971 ~ 10884198 (+)
CI01000340_11177838_11181646 MITFA coding downstream 78529 11177838 ~ 11181914 (+)
CI01000340_11194496_11206585 NA coding downstream 95187 11194496 ~ 11206794 (+)
CI01000340_11497324_11498648 GPR27 coding downstream 397872 11497181 ~ 11498967 (+)
CI01000340_11650862_11669170 GXYLT2 coding downstream 551553 11650862 ~ 11670166 (+)
CI01000340_11671437_11676662 PPP4R2B coding downstream 572128 11671437 ~ 11677022 (+)
G492445 NA non-coding upstream 56609 11039755 ~ 11040102 (+)
G492421 NA non-coding upstream 107977 10987390 ~ 10988734 (+)
G492405 NA non-coding upstream 160079 10934850 ~ 10936632 (+)
G492420 NA non-coding upstream 165204 10930566 ~ 10931507 (+)
G492416 NA non-coding upstream 169210 10927109 ~ 10927501 (+)
G492502 NA non-coding downstream 28514 11127823 ~ 11129095 (+)
G492714 NA non-coding downstream 158747 11258056 ~ 11258257 (+)
G492684 NA non-coding downstream 180577 11279886 ~ 11283609 (+)
G492764 NA non-coding downstream 285410 11384719 ~ 11408312 (+)
G492685 NA non-coding downstream 319103 11418412 ~ 11421190 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other upstream 308919 10781468 ~ 10787792 (+)
G492194 NA other upstream 444017 10651683 ~ 10652694 (+)
G490896 NA other upstream 1251659 9831473 ~ 9845052 (+)
G490839 NA other upstream 1859152 9234973 ~ 9237559 (+)
G490826 NA other upstream 1965314 9125184 ~ 9131397 (+)
G492847 NA other downstream 509797 11609106 ~ 11696961 (+)
G493617 NA other downstream 1956083 13055392 ~ 13069652 (+)
G493740 NA other downstream 2415918 13515227 ~ 13517111 (+)
G493782 NA other downstream 2722885 13822194 ~ 13923213 (+)
CI01000340_14100335_14108817 SLC16A1A other downstream 2998322 14099138 ~ 14108941 (+)

Expression


Co-expression Network