CI01000340_11450930_11478248


Basic Information

Item Value
gene id CI01000340_11450930_11478248
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 11450759 ~ 11478443 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_11450930_11478248.mRNA
AGTTGCAAATATGCTTATGTATTTTCGCATTGTTAAACATCACAGGCCTGTCCTTTATCAGTGCGTTTGACAGTCTCACTGTTTGTCGCGTGCACCGCACAATTTGGATGACAGTGGTAACTGGCAGTCGAATAACCAAATTATTTAGTCATGGGTTTTAAACGGGCACGACGGCAAATGGATGTCAAGTAAATGATGCAGTTTATTCCCCCTTTCCTCCTCCTCGCCAGGCGGGCTGCCACGGGACTTCTGCCAGCCTTAAATAAGTGTTACCCAGATGGCACTCGCATGACGCCCACTTGGTTACAGAATTGTTCCGCGGGAATAACTCGGCTTGCCACAACAAGCAATAGCTCTGTATATTTATCGTCCAGTAATATTACACTGTCAAAAACGTTCATCTCTGCGGAGATATTATTCGCTATCGTCACCTTCACAGGCATCCATTTGGACCTGCTCGATCTCAAGTTACCGACTCTTCCTCTGCATGTGGAGTGGCTGAGCAAATTTGCGCAGAGATTTTTGGTCGTCTCCCGGGACGGCAGAAAGGTGTTATTATGGCTATCACGTCAGGCGTCAGACGTAACGATGCCATTGAGTGTTACATCACTGCGCTTGAGCACTGTTATCTATGTTGAGGCCTGTTCTTGTAATGGGCTTTATTGATCTAAACAACATCAGGCTGGCCGTGATGTTATTAAGGTGAAGATAACTTCACTGTAACTTCCACTCAAACAATGTATTAGTGTTTTATTGGGTTTAAATAACTTTGGCTTTTAGACGCTAATGCAGCCGGTTAGTCACCCCGCTCTTTTATGGCTGCAGGATCTTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_11450930_11478248.mRNA True 837 mRNA 0.45 4 11450759 11478443

Neighbor

gene id symbol gene type direction distance location
CI01000340_11317716_11330576 NA coding downstream 119269 11317407 ~ 11331490 (-)
CI01000340_11283491_11314856 FOXP1B coding downstream 135903 11283128 ~ 11314856 (-)
CI01000340_11219006_11225062 NA coding downstream 225697 11218574 ~ 11225062 (-)
CI01000340_11185627_11192539 EEVS coding downstream 258220 11184104 ~ 11192539 (-)
CI01000340_11107554_11132757 FRMD4B coding downstream 318002 11107495 ~ 11132757 (-)
CI01000340_11553900_11576481 RYBPB, RYBP coding upstream 73937 11552380 ~ 11576827 (-)
CI01000340_11609366_11648905 SHQ1 coding upstream 130923 11609366 ~ 11648905 (-)
CI01000340_11679110_11679311 NA coding upstream 200393 11678836 ~ 11679311 (-)
CI01000340_11695434_11705476 PDZRN3B, PDZRN3 coding upstream 216232 11694675 ~ 11705798 (-)
CI01000340_11779096_11787055 NA coding upstream 300648 11779091 ~ 11788759 (-)
G492627 NA non-coding downstream 351434 11096654 ~ 11099325 (-)
G492630 NA non-coding downstream 372918 11077636 ~ 11077841 (-)
G492619 NA non-coding downstream 391987 11058282 ~ 11058772 (-)
G492603 NA non-coding downstream 421079 11029464 ~ 11029680 (-)
G492600 NA non-coding downstream 425610 11024932 ~ 11025149 (-)
G493057 NA non-coding upstream 22537 11500980 ~ 11501497 (-)
G493066 NA non-coding upstream 35259 11513702 ~ 11513978 (-)
G493074 NA non-coding upstream 51790 11530233 ~ 11530567 (-)
G493075 NA non-coding upstream 52482 11530925 ~ 11531183 (-)
G493110 NA non-coding upstream 172278 11650721 ~ 11662939 (-)
CI01000340_10357202_10357606 NA other downstream 1088355 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 1422776 10025656 ~ 10029589 (-)
G491712 NA other downstream 2651182 8799201 ~ 8799577 (-)
G489511 NA other downstream 5123387 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 5230117 6095704 ~ 6194501 (-)
G493109 NA other upstream 195303 11673746 ~ 11677994 (-)
G493266 NA other upstream 588734 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 1133773 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 2734905 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 3068556 14546999 ~ 14552983 (-)

Expression


Co-expression Network