XLOC_013581 (foxg1c)


Basic Information

Item Value
gene id XLOC_013581
gene name foxg1c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40900568 ~ 40901707 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026714
ATGGAGGACTTAAAGCCCCCCGTGAGTTTTTTCCACAAGTCGTCATTCAGCATCAGCAGTTTACTGCTGCGACACGAACGCGCGAGAAGCGACGCGCAGGAAGCACCGCGCTCTCGATCGGCGAAGCCGCCCGCGCGCTGCCATCAGCCTGCAGACAAACCTGTCCGGGAGCGCAACGAATTAGTGACCAGAACCGAGAAAAAAGACGGAGTTGGAGAGCCCAAGTGTGAGGGAACAGATGTGCCGGAGAAAAAGAGTAAACCCGATAAGCCTCCGTTCAGTTATAACGCGCTTATCATGATGGCCATCCGCCAGAGCCCGGAGCGGCGGCTCACCCTCAACGGCATCTACGAGTTCATCATGGGCAACTTTCCGTACTACCGGGAAAACAGACAGGGCTGGCAGAACTCCATCCGACACAACTTGAGCCTCAACAAGTGCTTCGTCAAAGTCCCGCGCCACTACGACGACCCGGGAAAGGGCAACTACTGGATGCTGGACCCGTCGAGTGACGATGTTTTCATCGGCGGAACCACCGGCAAACTCCGGCGGCGGTCCACCGCCGCGTCGAGAGCCAAACTGGCCATGAAGAGAGGCGCCCGGCTGTCCTCCACCGCCGCCTCCGCTGGACTGGCGTTCGCAGGCTCATTTTACTGGCCGGTCCCGCCGTTCGTGACCCTCCAGCACCGACACTCGAGCCCCGCAGCCGCGCACCACAGCAACTACGCCGCGTCTGTCCTCTCTCAGAGCGCGCGCCACTTCAGCTCCGTCGCTCCCGCCGCGGAAAGGCTTCTGATCCCGTCCAGCCAAGAGGCCACTTATTACGGGATGGGCTGCGAGCAGAtgacctcctcctcctcctccttctccacaTCTGCCTCTGTGCCTCTGCCTCTGTCCGCGCCCTGCTCTTTTAATTTACTCTCCAACCAGTCCAGTTATTTTTACTCCCATCAGGTGCCTCACACAGCTGGACTGTCGGCCTGGTCGCAGGAGGAATCTTACCTCTCCAAAACATCGCCTTCGGGACAGTTTTTCCCAGGAAAGCCTTCTCCTTCTTCTTCTGAATATATCGGAGGACTTTGTACAGACATTCCCAGTTATTTCCCTCATTTTAACACAGCCAGCTCCATGCACTGA

Function

symbol description
foxg1c Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in forebrain; immature eye; inner ear; and otic vesicle.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-26 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in forebrain; immature eye; inner ear; and otic vesicle.

Ensembl:

ensembl_id ENSDARG00000068380

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026714 True 1140 mRNA 0.58 1 40900568 40901707

Neighbor

gene id symbol gene type direction distance location
XLOC_013580 snrpd2 coding downstream 16481 40875873 ~ 40884087 (-)
XLOC_013579 vaspb coding downstream 44214 40761913 ~ 40856354 (-)
XLOC_013578 akt2 coding downstream 146985 40711188 ~ 40753583 (-)
XLOC_013577 cntd2 coding downstream 192031 40698550 ~ 40708537 (-)
XLOC_013576 si:ch211-132b12.7 coding downstream 215776 40668615 ~ 40684792 (-)
XLOC_013582 pglyrp5 coding upstream 929 40902636 ~ 40905901 (-)
XLOC_013583 polr2i coding upstream 8114 40909821 ~ 40913301 (-)
XLOC_013584 si:ch211-202c21.7 coding upstream 42437 40944144 ~ 40969581 (-)
XLOC_013585 RASA2 coding upstream 195699 41097406 ~ 41164358 (-)
XLOC_013586 zbtb38 coding upstream 296852 41198559 ~ 41219790 (-)
XLOC_013384 BX323829.1 misc downstream 21358337 19542102 ~ 19542231 (-)
XLOC_013575 NA non-coding downstream 378044 40521492 ~ 40522524 (-)
XLOC_013574 NA non-coding downstream 385489 40513030 ~ 40515079 (-)
XLOC_013571 NA non-coding downstream 448278 40364311 ~ 40452290 (-)
XLOC_013570 NA non-coding downstream 1041460 39854487 ~ 39859108 (-)
XLOC_013569 NA non-coding downstream 1103733 39791715 ~ 39796835 (-)
XLOC_013588 NA non-coding upstream 330607 41232314 ~ 41232928 (-)
XLOC_013589 NA non-coding upstream 442099 41343806 ~ 41344821 (-)
XLOC_013590 NA non-coding upstream 449282 41350989 ~ 41351483 (-)
XLOC_013592 NA non-coding upstream 640835 41542542 ~ 41544182 (-)
XLOC_013598 NA non-coding upstream 1559181 42460888 ~ 42606669 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_05764087_05765244 FOXG1C coding CI01000028 null 5763039 ~ 5765804 (+)