CI01000340_13012739_13028824


Basic Information

Item Value
gene id CI01000340_13012739_13028824
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13012410 ~ 13029087 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_13012739_13028824.mRNA
AAAATGTGGAAGAAATCAAAAGTATCTGATCAGACCGCAACTGGGCAAGGTAAAGCTTCAATGTTTCCATTCTTTTTTCTTTTTTTTTTTTCATTTTTAATAAATTCATCTTAGGTTGATACTTAAATTTTGTTAATGATTTAGGCTGAAATTATTTTTTCTCTCTCTCTCATATATATATATATATATATATATATATATACACACACACACATTCCATAACATTAGTGGGCATCAAAAAGAAATCCAAAGTTCCAGGAGTCATGATCACACAGTTCATAGAAGAACTTCCTGAGGGAAAGAGCCATCCAGATTTTATCCGCAAACCTATTTCTCTCACCATTCAAGAAGGTAAATTGGCTATTTTCAAGGCCATTGTAGTAGGTGATCCCACTCCTACTGTAACATGGGCAAGAAACAATGGTGATATTTCAGATCCAAAAAAATATCAAACCAAATTTGACCCAAATTCTCGTGAACACACTATTGAGATGCCAAATGTTTCTCCAGAACAAGCAGACACCTATAAATGTTTTGCTACTAACGAATTTGGAAAGGCTATGGTCACTGTTATCCTGAACATCATTGAAGTGGGTTTCAAGAAAAACAAAGCTAACCAGGAGTCCATTGCAACTGATCTGAAAGAGCTCAAGGCTGTCCTGAAAAGGAAAAGTAAGGTTCGCCCAAAAACCGAAGTAAGGAAAGATGGTGAAATTGACCCAAAGTTCTGGGAGATTTTGCTGAGCTCCGATAAGAAAGATTATGAGCGCATTTGTGCAGAATATGGGGTGACTGACTTCCGCTGGATGTTGAAGAAACTGAATGAGATGAAAAAGGAGAGAGAAAAAGAGCAAGCAGAGTTCATCAAAAGCATTTCCACCCTCAAACACATTGATGTGAATCCTGATGGAACTGCTTCTTTTGAACTTAATCTTAACCTTCTAGACCCCAGCTGTAAGATTTTCATCTACAAGGATGGTGAGATGATCCCATATTCTCAAGATCTTGATATAGAAATGAAACACAACCTGAATCAAGTAGGCAAGAAATACATCTTCACAATTAGGGACCTTGTCCCAGATGATGCTGGCCTTTACCAGTTGGACATAGAGGACGTCAATGTGTTTTCCACTGAATTTAAGATTCCAATGGTGGACTTTCTGATCAAGTTGAAGGATGTGAAAGCCATGGAGAGGGAGGATGCTATTTTTGAGTGTGTCCTCTCCAAACCTTTATCTAAAATCATGTGGGTTGGAAAGAACAATCGATTAGAACAGGGAGAGAAATATGACATCACTGTGTCCGAAGACAAACTGATCCACAGGCTGGTGGTGAAGGACTGTATGCAGGTGGATAAAGGCATCTATGCGGCTGTGGTTGGAATCAAATCTTGTAACGCCTGGCTAATAGTGGAAGCCGATAACAATCTGGATTCCAAGGGCAAAAAGAAACCCCGAAAAACAACCCAAGCCGGAGGGGCAGGAGCTGATTTGGCAAAGATCGCTGCAGAGCAGCAGGTCAAGCTACAGAAAGAAAGAGATGAGAGAATTGCGGCTGTCAAAACAGCCAGTGCTGAGAAAGAGGCAGCAGGTGCGGTGGACAACAGTGCTTCTGCATCGTCTTCTGCAGAGAGTTCTAGTGCTGAGAAAGAGGAAGCAGATAGGTCTAGTGCTAAGAAAGAGGCAGCAGGTGTGGTGGACAGCAGGTGCGGTGCTTCTGCATCTTCTTCGACAAATAGTTCTAGTGCTGAGAAAGAGGTCATGAGAGATGACTCTGTCGACACTGGGCTGGCGAGGAGTGTACCAGACACAAGTGGAAAGGACAAAGCGGAAGATGATAGAACTCACTGCACCAGTGGAGAGTCAAATGTACATATTGTCAGAGGCGAACCAGCAGAACTTGCTTGTAACCTAAGCACCAGCAAAGCAAACAGGGATGGGGAGAAGTTGTACTCTAAAGTTGGAGATAAACAAGAGTTAGTAATACAAAGCTACAAAGATTCATCCTCAGGACAGAATCGGGCTGAAGTGATTGAGTGCAAGACTGACGCAATGGAAACAGCTGGAGATCTTCCTAAATTTGACCCTGATGACCTGCACAAGTTCTCCAAAAACGTGGTGGTTAAAGTGGGCCAAACTGCTTCCTTTAAAATGCCATTCCCACCTCAAGACTCATCAGAGATCAACTGGTTTAAGGATGGCACAGAGCTTTTTGATGGAGGCAGAATAAAAGTAGTAAAGGAACTAAACCAGAGCCGCCTTCAGATAAAAGAATGCCTGCGATCTTACTCAGGGGAAATTAAGATCCAGCTTAAAAACCCTTTTGGCACCGCAGAGGCCTTCTCTAGGCTTATTGTGGTCGACAAACCAGGTCCACCACAAGGGCCAGTAGAAGTGACTGACAGCTCATCTTCTGTCATTGAACTTAAATGGAATCCACCAAGTGACACCGGTGGCTCTGAAGTGACAAACTACCTTGTTGAGCGTCAGCAGGTAGGGCAGAGTGTGTGGAAGAAGGTGTGGGATAGTTCAGCCAACCGCCTGTCCTTTCGAGACAGAAATGTGTCCCATGGCAAGAAATACATATACCGAATCTACGCTGGGAACTCTGAGGGTATCAGTGATCCTCTGGAGACGGAAAGCATCATGGCTGGAACTCTGACAAGTAATCAAAACTTCTATGTTGCAGTTTTCCCTGGTCAACCTGCCCCTCCTAAGGTGGTCGGCGTGTTCAAAAACTGTATCAACCTAACATGGACTCCACCAGAGAAAGATGGAGGAACCAAAATACTGGGCTACCAGCTGGAGAAACGCAAGAAAGATACAAACCAGTGGGTGACTCTGAACCAAGTTAATGACCCTATTCAAGCTCTGAAGTATGCAGTGAAGGATGTCTCTGAGGGGTCAGAGTATGAGTTCAGAGTATCAGCCATTAATATGTCTGGGGCTGGAGAACCCAGCGCTCCCTCTGTGATGGTCTGTGCTAAAAACCCCAACATCAGGCCCCGCTTCAAAGATCCTATAGACTTCATGGTTGTGAGAGCAGGAAATTCTATCAGAATCAAAGTCGATTATGAGGGCTCTCCACAACCTGACATCACATGGCTGAAAAATGATGAATCTGTGTCCCCCTGGGTCAACATCATCAATGTTGAGGACGCATCCACACTCGTCATCCCCTCGTCAAAGTATTCAGACTCGGGTGTTTATACCATCATGGCAAAGAACTCTAGTGGACAGTCCAGCTTTGACATACAAGTCAGAGTAGCAGATGAACCAAAGCCTCCAGGCCCAGTGGAGCTAGAACAGGTTGTTTATGGTAAAGTCATTATCACATGGGCTCCATCTCCAGACCAGGGGAAAGACGATCGACTGCACTACTTGGTGGAAGAACGTGATTCCAACACACGTGTTTGGCACACAATAGCTGACCGTCTGTTTTGCAACACTTATACTGCCTCTGTCCACTCTGGTCGTGAATACCACTTCAGAGTCTATGCAAGAAATGATATGGGATTTTCTGATCCATCTAAATCGCCAACGTGGGGGATTAACGAGCTGAGAGTGCCACTAGTCAAAAGCTTACCGGTTCCGGTAACTCTTGAGAGGCCTCCTTCCATCTTGGTTCCACTTAAAGTCCACAGCCCACCACAGGGATATCAGCTGTACATGACCTGCGCTGTCCGTGGCTTCCCCACACCACATGTCACATGGTACCTCAATGGCAACTGCATCAACTCCAACAACACCTACTACATCACAAATGCATATGGCGTCTGCTCTATGTACATCATCCGAGTTGGGCCAGAACATAGTGGCGAGTACAGAGTGGTGGCGGTCAATTCATTTGGCAGAGCAGAATGTTCCACCAAACTAAGAGTGAAAGGTATGTCACATAATGATTATTTCCACATTTGACATGTTATTGCAACTATGAAGTGCCATCATAAATTATATTTTTGTTCTGATTTCATTCTTTTCGATTTATTCACAGATTGAAATTCAGAGTGCTGACAACTAGCTAGCTTGTGTACTGCAAACCAATAGTGTATTATTTTATGTAAAGATACTTTGAATATGCAATGTGCATTGTGAAAAGCACTACAGTATCAGCCTGGAAGATATATAGATCTATCACTCGGTGATATTTTATTAGATAAAATCAGAATATATTTATTAACAGTATATCAGTGCTGTGATAGCTATAAGACTCAAATGTGAACTGTATTTAATGAAATGCAAATAAA

Function

NR:

description
hypothetical protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_13012739_13028824.mRNA True 4246 mRNA 0.43 21 13012410 13029087

Neighbor

gene id symbol gene type direction distance location
CI01000340_13000573_13007186 NA coding downstream 5224 12999598 ~ 13007186 (-)
CI01000340_12981561_12992400 NA coding downstream 20010 12981347 ~ 12992400 (-)
CI01000340_12975913_12979472 NA coding downstream 32938 12975886 ~ 12979472 (-)
CI01000340_12969774_12974141 TARBP2 coding downstream 38269 12968955 ~ 12974141 (-)
CI01000340_12881755_12891388 PTGIS coding downstream 120495 12881653 ~ 12891915 (-)
CI01000340_13040679_13050661 IGFN1.3 coding upstream 11592 13040679 ~ 13050661 (-)
CI01000340_13055639_13078780 IGFN1.1 coding upstream 26083 13055170 ~ 13078780 (-)
CI01000340_13123870_13230976 GRM4, GRM7 coding upstream 94783 13123870 ~ 13230976 (-)
CI01000340_13278282_13284505 NA coding upstream 249048 13278135 ~ 13284802 (-)
CI01000340_13333604_13339477 NA coding upstream 304420 13333507 ~ 13341001 (-)
G494014 NA non-coding downstream 110057 12902147 ~ 12902353 (-)
G494005 NA non-coding downstream 186253 12825666 ~ 12826157 (-)
G493939 NA non-coding downstream 200221 12760791 ~ 12812189 (-)
G493942 NA non-coding downstream 251837 12760227 ~ 12760573 (-)
G493987 NA non-coding downstream 298431 12713627 ~ 12713979 (-)
G494076 NA non-coding upstream 57025 13086112 ~ 13086361 (-)
G494096 NA non-coding upstream 455710 13484797 ~ 13485714 (-)
G494045 NA non-coding upstream 652187 13681274 ~ 13684384 (-)
G494203 NA non-coding upstream 899306 13928393 ~ 13928654 (-)
G494210 NA non-coding upstream 906971 13936058 ~ 13936413 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 338885 12577435 ~ 12625758 (-)
G493266 NA other downstream 895510 12067177 ~ 12116900 (-)
G493109 NA other downstream 1334416 11673746 ~ 11677994 (-)
CI01000340_10357202_10357606 NA other downstream 2650006 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 2984427 10025656 ~ 10029589 (-)
CI01000340_14318434_14336130 NA other upstream 1184261 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 1517912 14546999 ~ 14552983 (-)
G494872 NA other upstream 1528536 14557623 ~ 14559023 (-)
G495475 NA other upstream 2577654 15606741 ~ 15612563 (-)
CI01000340_16175837_16177624 NA other upstream 3142590 16171677 ~ 16178314 (-)

Expression


Co-expression Network