CI01000340_13278282_13284505


Basic Information

Item Value
gene id CI01000340_13278282_13284505
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13278135 ~ 13284802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_13278282_13284505.mRNA
AAACGCAGATATATTTATTAAAGAAATTAAGGCTTTTAAGGCTTTTTTAGTGAGCTGAACGAAAGCTCTTTCATCAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCAAACAGAGTGGGCTATGTGGGCGTTGAACGCACTGCTTCGACTGAAGAGCACTGCCTACATCTCAGCACGGCTCTGCTCTCTAGTTATGCTCAGTGCAGTACTATCTCTTCAGGTATGAGCTTCTAACACAAGACGCACAATATTTACCTATATTGAATGAATGAACGCGGAGACTTGGAGAAATGGAAAGTACTTCGACTCCGAGAGCGTTTCAGCACCACTTTCACTGGACAGCGCAACAGCTTTTCCCACTTGGTATCGCGCTTTGGGAGATTTGCGTGTGATTTCCATACGTGGGGAATGGAGTTTGTCGAATTGGGGGCCGCCGTACAGCAAACGATTAACGAGATACCCACAAATCTGCAGTCGACTGTGTTTAGGTGATCATACTGGAGGTGTTTGGCAACAGCGGCAGCAGATAGAAGAAGGAGACCCTGGCCAACTGCTCGAAGACTGGGGGGAGCACAGCACTAGCGTCGTCGCTGTCCCCGACAGTGTTTCTCAATCCACAGCATACACAGCAAAAACGTTCCTATGTGCTCTATTACCGCAAATGGGCCGTGTAGTGTTTTGGGTAAGAGGATCTGTGGCACAAGATCGTACCCCCCCAGAGGAACTCAATGGACTGTATGAAACAGAGAACTCAGTAGTCTGGCTTGCGCTCTGCATCGGTTCATTTCAGAGCGATGGTTGCAGGGTATTGTCCACCTCTCTGGCGAGAGCCAACTCATTAGGCCCGCTTCTGCATGGGCGTCGGGATGCAAGACACGTGCGTCTCTTCAGAAGTGCTCATCTTTCTCAAAAATTTCTGTTAAATCATCTTTGTTTGCTCGGCTGCACTCGGAGCTTGATTTAGGACTTGCTTAAAAAGCAAAAAAAGAAATTTTTGGTACCCACAGTGATAAATGATGTGTAAATGGTCATTAGTCATATGGCAGAACAGTGAGGTATATAAAAAAACAAAAACAAAACAATGACGGGCAAATTAAGAAGAGGCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_13278282_13284505.mRNA True 1140 mRNA 0.46 2 13278135 13284802

Neighbor

gene id symbol gene type direction distance location
CI01000340_13123870_13230976 GRM4, GRM7 coding downstream 47159 13123870 ~ 13230976 (-)
CI01000340_13055639_13078780 IGFN1.1 coding downstream 199355 13055170 ~ 13078780 (-)
CI01000340_13040679_13050661 IGFN1.3 coding downstream 227474 13040679 ~ 13050661 (-)
CI01000340_13012739_13028824 NA coding downstream 249048 13012410 ~ 13029087 (-)
CI01000340_13000573_13007186 NA coding downstream 270949 12999598 ~ 13007186 (-)
CI01000340_13333604_13339477 NA coding upstream 48705 13333507 ~ 13341001 (-)
CI01000340_13350921_13376832 NA coding upstream 66009 13350811 ~ 13377534 (-)
CI01000340_13387485_13391568 NA coding upstream 101527 13386329 ~ 13391568 (-)
CI01000340_13457239_13457881 NA coding upstream 171922 13456724 ~ 13458672 (-)
CI01000340_13466556_13478823 LRIG2 coding upstream 181644 13466446 ~ 13480433 (-)
G494076 NA non-coding downstream 191774 13086112 ~ 13086361 (-)
G494014 NA non-coding downstream 375782 12902147 ~ 12902353 (-)
G494005 NA non-coding downstream 451978 12825666 ~ 12826157 (-)
G493939 NA non-coding downstream 465946 12760791 ~ 12812189 (-)
G493942 NA non-coding downstream 517562 12760227 ~ 12760573 (-)
G494096 NA non-coding upstream 199995 13484797 ~ 13485714 (-)
G494045 NA non-coding upstream 396472 13681274 ~ 13684384 (-)
G494203 NA non-coding upstream 643591 13928393 ~ 13928654 (-)
G494210 NA non-coding upstream 651256 13936058 ~ 13936413 (-)
G494322 NA non-coding upstream 757772 14042574 ~ 14043062 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 604610 12577435 ~ 12625758 (-)
G493266 NA other downstream 1161235 12067177 ~ 12116900 (-)
G493109 NA other downstream 1600141 11673746 ~ 11677994 (-)
CI01000340_10357202_10357606 NA other downstream 2915731 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 3250152 10025656 ~ 10029589 (-)
CI01000340_14318434_14336130 NA other upstream 928546 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 1262197 14546999 ~ 14552983 (-)
G494872 NA other upstream 1272821 14557623 ~ 14559023 (-)
G495475 NA other upstream 2321939 15606741 ~ 15612563 (-)
CI01000340_16175837_16177624 NA other upstream 2886875 16171677 ~ 16178314 (-)

Expression


Co-expression Network