CI01000340_13333604_13339477


Basic Information

Item Value
gene id CI01000340_13333604_13339477
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13333507 ~ 13341001 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_13333604_13339477.mRNA
AGACGAGGAGAAAATGGGTGGGGTGCGTGTTTATGAGATAAGAGCTGAGAACATGTTTGGAGTCAGTTTTATATGTCTAACACATTTTTTTCTGACCATTTCATATAATCCTTGAGGGAAAAGAGTTGATTTTATAAAGGTCATTCAGATAAAAAAGGAAGAAAATACTGCTGAATACATTGAAACTATCATGTAAACATGGGTGTGCTTCACAGTTTCATCTGAATTTATTTTACTTTGACTTTCTAGAAAATGATATTAATATCGATGTGTTTTTTTCCGAAGGGTCAGCAGCTGGTTAACTGTGTCCGGGTTCCCTGTTTGAATCATTAAACTCTTTTGTGGTTAAATACACACAGTTACTATAGCAATCAAAACCACGGTTTCTATGGAAATACACACATTGAAGTTAACCATGTGTCACCAAAACACAGCAAGTCAAAAAACAAAACAAAAAAAAAAGTATAAAATAAAAGCTAAAGCTGATATTACCAATTAGACATATGGTAATAATTGCCATAATGGACAGAGGAGGAAAACACCATTGTAACTATAGGCACTGTCAAACATAATCAAATTAAAGCTGGGGAACACCCTTCACTGACTCACACATTCCAGTTCAGTCTGAAGATGGAAAGCGGAGACTGCCTTCAAGACTTCGCCAGACTGGATTCAATTGATGATTTTACATTTTTGTTATTCAAATACATGCACTCTATAGCAACAGCATTTATTTATTAATGCTGTACAATAAATGCTCTTAATCATGTACAGCTTTTGGAAATGTTTTAGTCATTTAGTCAAATATGTCCATGTTCAGAATATATACCACTATTTCTCCAGTATGTGGTAGGCTATGTATACAGTGCATGCATGTTTCTTGTTCGTATGAATACCCAGATACACACCCAAGTTTATTTTTAATGTTCTTCAATGTATATAAAGTTCAAACAGCATTTATTTTAAATATATACTTTTTGCAACATTATAAATGTCTTTACTTCACTTTTGATCAATTTAATGCGTCCTTGCCGAATAAAAATATTAATTTCTTAAAAAAAAATCTTACTGACCCAAACTTTTGAACGGTTGTGTACATAGGCCTACATAAAGTTGGCAAATAAAACCAATATATCATACTGTCAAAAAAGAAATACTTAATGTTTAAAAGTGTATACTAAACAGCCAATTTACTTTTGACAGTGTTTAATCTCGGCAGAAGATTTTGGTGGGAGGACTGGCGTCATAGAATGGGCGTGGTTTTTTTTCTAATATGAGTGAAGGTTTCCTTTCCTATGTTTAGTCGTACACGCGAATCTATGAAACGCCTTTTTTGTCAACTTTTTTTATTTCATTCTTCGGCGAGACCAATTAACTTTTTATCGGGAATATCTTTGTTCGTGTAGTGCTTTTCTGTTATTTCATCTGAATGCCTTCAGCCCGTTAAATTTTCTGTCAGTTGTAGCTATATTCACGACAAGTGTTTAACATTACTGTTTAAAAAGAAAATCTATTTAAGTGACGATGACAAGTGTGAAGGCTTGGCCACTGCTTCTACTGCAGGTTTCTCTAGTCTCTATGGGGAAAGATTGCCCGTTTCCTGTTTTGAATGGCAAAATTATTTTGTCTTCGGAATCCAGACAGAGGAATAAGTTCCCAGATAATTCAAACGTGTTTGTGGAGTGTGTTAGAGGGCACGAGATCGAGGAAGAGAAAGACTGTGGATTACCTAAAGTTTTACCACATATGACCTACTCCATGCCAGATGGAACGTTGTTTGGTGCCCGCATAAAACCCATATGTGAGAGGGGATATGACCTGCAAGGATCAAGTTACATGCATTGTCTTGCATTTGGCTGGAGCGGAAGTCCTAATTGTACTTTGATAATATGTGATGAGCCAGATCCAATTGAACATGGAAAGTTCTCAATGCCCAGGAACATTATTCATTTTGATGATGTCATTGAATATTCCTGCGACGATAACTACACCCTCGTTGGAGACAGATCTATTACATGTGGGCAATATGGGGAATATAGTTCACCACCTCCACAATGCCAAGCTATTGAATGTCGAGTTCCTAAAATTAGTTTAGGTAACCGGACTGAAGGAAATCCTCCGTTCTTTTATAAAAGTGAAGCCACATTTGAATGCTGGCCAGGTTATAGGATGAAAGGTTTAGCTCCATCAGTGTGTGAAGAGAGTGGCTGGTCTGCCCTTCCTGTTTGTGTTGAAGGTAAGCTTAACCTTCTGAATGCAATAATGGATCGGATTTTTTCTCAAGGTGTGGATTCATGATATGAGTGATAAGTAGACAGAATCTGCAGTGTTTCCTGCGCTGATTTCAAGGAAAACTCAACTGAGCTGATGTCAAGGTTGAGGTGGCTGCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_13333604_13339477.mRNA True 2395 mRNA 0.37 6 13333507 13341001

Neighbor

gene id symbol gene type direction distance location
CI01000340_13278282_13284505 NA coding downstream 48705 13278135 ~ 13284802 (-)
CI01000340_13123870_13230976 GRM4, GRM7 coding downstream 102531 13123870 ~ 13230976 (-)
CI01000340_13055639_13078780 IGFN1.1 coding downstream 254727 13055170 ~ 13078780 (-)
CI01000340_13040679_13050661 IGFN1.3 coding downstream 282846 13040679 ~ 13050661 (-)
CI01000340_13012739_13028824 NA coding downstream 304420 13012410 ~ 13029087 (-)
CI01000340_13350921_13376832 NA coding upstream 9810 13350811 ~ 13377534 (-)
CI01000340_13387485_13391568 NA coding upstream 45328 13386329 ~ 13391568 (-)
CI01000340_13457239_13457881 NA coding upstream 115723 13456724 ~ 13458672 (-)
CI01000340_13466556_13478823 LRIG2 coding upstream 125445 13466446 ~ 13480433 (-)
CI01000340_13511512_13525933 RAP1GAP coding upstream 170511 13511512 ~ 13525933 (-)
G494076 NA non-coding downstream 247146 13086112 ~ 13086361 (-)
G494014 NA non-coding downstream 431154 12902147 ~ 12902353 (-)
G494005 NA non-coding downstream 507350 12825666 ~ 12826157 (-)
G493939 NA non-coding downstream 521318 12760791 ~ 12812189 (-)
G493942 NA non-coding downstream 572934 12760227 ~ 12760573 (-)
G494096 NA non-coding upstream 143796 13484797 ~ 13485714 (-)
G494045 NA non-coding upstream 340273 13681274 ~ 13684384 (-)
G494203 NA non-coding upstream 587392 13928393 ~ 13928654 (-)
G494210 NA non-coding upstream 595057 13936058 ~ 13936413 (-)
G494322 NA non-coding upstream 701573 14042574 ~ 14043062 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 659982 12577435 ~ 12625758 (-)
G493266 NA other downstream 1216607 12067177 ~ 12116900 (-)
G493109 NA other downstream 1655513 11673746 ~ 11677994 (-)
CI01000340_10357202_10357606 NA other downstream 2971103 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 3305524 10025656 ~ 10029589 (-)
CI01000340_14318434_14336130 NA other upstream 872347 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 1205998 14546999 ~ 14552983 (-)
G494872 NA other upstream 1216622 14557623 ~ 14559023 (-)
G495475 NA other upstream 2265740 15606741 ~ 15612563 (-)
CI01000340_16175837_16177624 NA other upstream 2830676 16171677 ~ 16178314 (-)

Expression


Co-expression Network